View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1318_low_87 (Length: 337)

Name: NF1318_low_87
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1318_low_87
NF1318_low_87
[»] chr5 (1 HSPs)
chr5 (9-308)||(2258865-2259164)
[»] chr4 (2 HSPs)
chr4 (9-308)||(37528888-37529186)
chr4 (36-307)||(50164718-50164985)
[»] chr1 (2 HSPs)
chr1 (9-308)||(28964512-28964810)
chr1 (9-308)||(28972636-28972934)
[»] chr3 (3 HSPs)
chr3 (185-306)||(30169629-30169747)
chr3 (234-306)||(39187610-39187682)
chr3 (234-264)||(20781012-20781042)
[»] chr8 (5 HSPs)
chr8 (185-264)||(17888819-17888896)
chr8 (234-264)||(8357406-8357436)
chr8 (185-306)||(23686867-23686985)
chr8 (234-264)||(25087165-25087195)
chr8 (234-306)||(45248082-45248154)
[»] chr7 (5 HSPs)
chr7 (234-264)||(18289126-18289156)
chr7 (50-95)||(17473336-17473381)
chr7 (50-95)||(17508780-17508825)
chr7 (50-95)||(17544389-17544434)
chr7 (50-95)||(17579833-17579878)
[»] chr6 (2 HSPs)
chr6 (185-250)||(21989073-21989136)
chr6 (108-156)||(27436678-27436726)
[»] scaffold0003 (1 HSPs)
scaffold0003 (108-156)||(50636-50684)


Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 9 - 308
Target Start/End: Complemental strand, 2259164 - 2258865
Alignment:
Q  9 caacaaaatcataaaattacgaacaactcactttattgtcatggtaaattaattatccaaaattttctattccttccacaaacccattaaattaccaaca 108  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2259164 caacaaaatcatgaaattacgaacaactaactttattgtcatggtaaattaattatccaaaattttctattccttcaacaaacccattaaattaccaaca 2259065  T
Q  109 aatgtgtttgactaagcaatctcaattagtaagaacaattaaaccaaccaataactgcttttaattnnnnnnnnttaagatgaaatatgattcgggtata 208  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||         |||||||||||||||||| |||||||    
T  2259064 aatgtgtttgactaagcaatctcaatcagtaagaacaattaaaccaaccaataactgcttttaataaaaaaaaattaagatgaaatatgatttgggtata 2258965  T
Q  209 agaagtatgtcatttgtcgtgattataatttgaaataaaaattcattttcttgttctttgccattctctaactcaaagggtttagcctagtagtaaaaat 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  2258964 agaagtatgtcatttgtcgtgattataatttgaaataaaaattcattttcttgttctttgcaattctctaactcaaagggtttagtctagtagtaaaaat 2258865  T

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Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 9 - 308
Target Start/End: Complemental strand, 37529186 - 37528888
Alignment:
Q  9 caacaaaatcataaaattacgaacaactcactttattgtcatggtaaattaattatccaaaattttctattccttccacaaacccattaaattaccaaca 108  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  37529186 caacaaaatcataaaattaccaacaactcactttattgtcatggtaaattaattatccaaaattttctattccttcaacaaacccattaaattaccaaca 37529087  T
Q  109 aatgtgtttgactaagcaatctcaattagtaagaacaattaaaccaaccaataactgcttttaattnnnnnnnnttaagatgaaatatgattcgggtata 208  Q
    |||||||||||||| |||||| |||| ||||||||||||||||||||||||||| ||||||||| |        ||||||||||||||||||||||||||    
T  37529086 aatgtgtttgactaggcaatcccaatcagtaagaacaattaaaccaaccaataattgcttttaa-taaaaaaaattaagatgaaatatgattcgggtata 37528988  T
Q  209 agaagtatgtcatttgtcgtgattataatttgaaataaaaattcattttcttgttctttgccattctctaactcaaagggtttagcctagtagtaaaaat 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||  |||||||||||||    
T  37528987 agaagtatgtcatttgtcgtgattataatttgaaataaaaattcattttctagttctttgcaattctctaactcaaagggtttagtttagtagtaaaaat 37528888  T

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Target: chr4; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 36 - 307
Target Start/End: Original strand, 50164718 - 50164985
Alignment:
Q  36 tcactttattgtcatggtaaattaattatccaaaattttctattccttccacaaacccattaaattaccaacaaa-tgtgtttgactaagcaatctcaat 134  Q
    |||||||| |||||| |||||||||| |||||||| |||| ||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  50164718 tcactttagtgtcatagtaaattaatcatccaaaactttccattccctcaacaaacccattaaattaccaacaaaatgtgtttgactaagcaatctcaat 50164817  T
Q  135 tagtaagaacaattaaaccaaccaataactgcttttaattnnnnnnnnttaagatgaaatatgattcgggtataagaagtatgtcatttgtcgtgattat 234  Q
     || || ||||||||||||||| ||||||||||||||||         |   ||||| ||||| |||||||||||||| ||||||||||| ||||||  |    
T  50164818 gagcaaaaacaattaaaccaactaataactgcttttaataaaaaatctt---gatgagatatggttcgggtataagaaatatgtcatttgccgtgat--t 50164912  T
Q  235 aatttgaaataaaaattcattttcttgttctttgccattctctaactcaaagggtttagcctagtagtaaaaa 307  Q
    |||||||   ||||||||||||||| ||||||||| |||||| |||||||||||||||| |||| ||||||||    
T  50164913 aatttgatccaaaaattcattttctagttctttgcaattctccaactcaaagggtttagtctagcagtaaaaa 50164985  T

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Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 9 - 308
Target Start/End: Original strand, 28964512 - 28964810
Alignment:
Q  9 caacaaaatcataaaattacgaacaactcactttattgtcatggtaaattaattatccaaaattttctattccttccacaaacccattaaattaccaaca 108  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  28964512 caacaaaatcataaaattaccaacaactcactttattgtcatggtaaattaattatccaaaattttctattccttcaacaaacccattaaattaccaaca 28964611  T
Q  109 aatgtgtttgactaagcaatctcaattagtaagaacaattaaaccaaccaataactgcttttaattnnnnnnnnttaagatgaaatatgattcgggtata 208  Q
    |||||||||||||| |||||| |||| ||||||||||||||||||||||||||| ||||||||| |        ||||||||||||||||||||||||||    
T  28964612 aatgtgtttgactaggcaatcccaatcagtaagaacaattaaaccaaccaataattgcttttaa-taaaaaaaattaagatgaaatatgattcgggtata 28964710  T
Q  209 agaagtatgtcatttgtcgtgattataatttgaaataaaaattcattttcttgttctttgccattctctaactcaaagggtttagcctagtagtaaaaat 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||  |||||||||||||    
T  28964711 agaagtatgtcatttgtcgtgattataatttgaaataaaaattcattttctagttctttgcaattctctaactcaaagggtttagtttagtagtaaaaat 28964810  T

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Target: chr1; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 9 - 308
Target Start/End: Original strand, 28972636 - 28972934
Alignment:
Q  9 caacaaaatcataaaattacgaacaactcactttattgtcatggtaaattaattatccaaaattttctattccttccacaaacccattaaattaccaaca 108  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  28972636 caacaaaatcataaaattaccaacaactcactttattgtcatggtaaattaattatccaaaattttctattccttcaacaaacccattaaattaccaaca 28972735  T
Q  109 aatgtgtttgactaagcaatctcaattagtaagaacaattaaaccaaccaataactgcttttaattnnnnnnnnttaagatgaaatatgattcgggtata 208  Q
    |||||||||||||| |||||| |||| ||||||||||||||||||||||||||| ||||||||| |        ||||||||||||||||||||||||||    
T  28972736 aatgtgtttgactaggcaatcccaatcagtaagaacaattaaaccaaccaataattgcttttaa-taaaaaaaattaagatgaaatatgattcgggtata 28972834  T
Q  209 agaagtatgtcatttgtcgtgattataatttgaaataaaaattcattttcttgttctttgccattctctaactcaaagggtttagcctagtagtaaaaat 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||  |||||||||||||    
T  28972835 agaagtatgtcatttgtcgtgattataatttgaaataaaaattcattttctagttctttgcaattctctaactcaaagggtttagtttagtagtaaaaat 28972934  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 306
Target Start/End: Complemental strand, 30169747 - 30169629
Alignment:
Q  185 aagatgaaatatgattcgggtataagaagtatgtcatttgtcgtgattataatttgaaataaaaattcattttcttgttctttgccattctctaactcaa 284  Q
    ||||||||| ||| ||| |||||||| | ||| ||||||||| ||||||  |||||||||||||||  ||||| |||||| |||| ||| |  ||||| |    
T  30169747 aagatgaaagatgtttcaggtataaggaatatttcatttgtcatgatta--atttgaaataaaaatatatttt-ttgttcattgcaatttttcaactcta 30169651  T
Q  285 agggtttagcctagtagtaaaa 306  Q
    ||| ||||| ||||||||||||    
T  30169650 aggatttagtctagtagtaaaa 30169629  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 306
Target Start/End: Original strand, 39187610 - 39187682
Alignment:
Q  234 taatttgaaataaaaattcattttcttgttctttgccattctctaactcaaagggtttagcctagtagtaaaa 306  Q
    ||||||||||||||||| |||||| | |||  |||| ||| || ||||| |||||||||| ||||||||||||    
T  39187610 taatttgaaataaaaatccattttttggtttattgcaattttccaactctaagggtttagtctagtagtaaaa 39187682  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 264
Target Start/End: Original strand, 20781012 - 20781042
Alignment:
Q  234 taatttgaaataaaaattcattttcttgttc 264  Q
    |||||||||||||||||||||||||||||||    
T  20781012 taatttgaaataaaaattcattttcttgttc 20781042  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 264
Target Start/End: Original strand, 17888819 - 17888896
Alignment:
Q  185 aagatgaaatatgattcgggtataagaagtatgtcatttgtcgtgattataatttgaaataaaaattcattttcttgttc 264  Q
    ||||||| ||||| || |||||||||   ||| ||||||||| | ||||  |||||||||||||||||||||||||||||    
T  17888819 aagatgagatatggtttgggtataagggatatttcatttgtcattatta--atttgaaataaaaattcattttcttgttc 17888896  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 264
Target Start/End: Complemental strand, 8357436 - 8357406
Alignment:
Q  234 taatttgaaataaaaattcattttcttgttc 264  Q
    |||||||||||||||||||||||||||||||    
T  8357436 taatttgaaataaaaattcattttcttgttc 8357406  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 306
Target Start/End: Original strand, 23686867 - 23686985
Alignment:
Q  185 aagatgaaatatgattcgggtataagaagtatgtcatttgtcgtgattataatttgaaataaaaattcattttcttgttctttgccattctctaactcaa 284  Q
    ||||||||| ||| ||  |||||||| | ||| ||||||||| ||||||  |||||||||||||||  ||||| |||||| |||| ||| |  ||||| |    
T  23686867 aagatgaaagatgttttaggtataaggaatatttcatttgtcatgatta--atttgaaataaaaatctatttt-ttgttcattgcaatttttcaactcta 23686963  T
Q  285 agggtttagcctagtagtaaaa 306  Q
     |||||||| ||||||||||||    
T  23686964 cgggtttagtctagtagtaaaa 23686985  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 264
Target Start/End: Complemental strand, 25087195 - 25087165
Alignment:
Q  234 taatttgaaataaaaattcattttcttgttc 264  Q
    |||||||||||||||||||||||||||||||    
T  25087195 taatttgaaataaaaattcattttcttgttc 25087165  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 306
Target Start/End: Original strand, 45248082 - 45248154
Alignment:
Q  234 taatttgaaataaaaattcattttcttgttctttgccattctctaactcaaagggtttagcctagtagtaaaa 306  Q
    ||||||||||||||||| |||||| | |||| |||| ||| |  ||||| |||| ||||| ||||||||||||    
T  45248082 taatttgaaataaaaatccattttttggttcattgcaatttttcaactctaaggatttagtctagtagtaaaa 45248154  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 264
Target Start/End: Complemental strand, 18289156 - 18289126
Alignment:
Q  234 taatttgaaataaaaattcattttcttgttc 264  Q
    |||||||||||||||||||||||||||||||    
T  18289156 taatttgaaataaaaattcattttcttgttc 18289126  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 17473381 - 17473336
Alignment:
Q  50 tggtaaattaattatccaaaattttctattccttccacaaacccat 95  Q
    |||||||| ||||||||||||||||| ||| |||| ||||||||||    
T  17473381 tggtaaataaattatccaaaattttcaatttcttcaacaaacccat 17473336  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 17508825 - 17508780
Alignment:
Q  50 tggtaaattaattatccaaaattttctattccttccacaaacccat 95  Q
    |||||||| ||||||||||||||||| ||| |||| ||||||||||    
T  17508825 tggtaaataaattatccaaaattttcaatttcttcaacaaacccat 17508780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 17544389 - 17544434
Alignment:
Q  50 tggtaaattaattatccaaaattttctattccttccacaaacccat 95  Q
    |||||||| ||||||||||||||||| ||| |||| ||||||||||    
T  17544389 tggtaaataaattatccaaaattttcaatttcttcaacaaacccat 17544434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 17579833 - 17579878
Alignment:
Q  50 tggtaaattaattatccaaaattttctattccttccacaaacccat 95  Q
    |||||||| ||||||||||||||||| ||| |||| ||||||||||    
T  17579833 tggtaaataaattatccaaaattttcaatttcttcaacaaacccat 17579878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 250
Target Start/End: Original strand, 21989073 - 21989136
Alignment:
Q  185 aagatgaaatatgattcgggtataagaagtatgtcatttgtcgtgattataatttgaaataaaaat 250  Q
    ||||||||||||| ||| |||||||| | ||| ||||||||| ||||  |||||||||||||||||    
T  21989073 aagatgaaatatgtttcaggtataaggaatatttcatttgtcatgat--taatttgaaataaaaat 21989136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 156
Target Start/End: Complemental strand, 27436726 - 27436678
Alignment:
Q  108 aaatgtgtttgactaagcaatctcaattagtaagaacaattaaaccaac 156  Q
    |||| ||||||||| ||||||| ||||||| | ||||||||||||||||    
T  27436726 aaatatgtttgactgagcaatcccaattagcatgaacaattaaaccaac 27436678  T

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Target: scaffold0003 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 156
Target Start/End: Original strand, 50636 - 50684
Alignment:
Q  108 aaatgtgtttgactaagcaatctcaattagtaagaacaattaaaccaac 156  Q
    |||| ||||||||| ||||||| ||||||| | ||||||||||||||||    
T  50636 aaatatgtttgactgagcaatcccaattagcatgaacaattaaaccaac 50684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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