View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1318_low_91 (Length: 326)

Name: NF1318_low_91
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1318_low_91
NF1318_low_91
[»] chr3 (1 HSPs)
chr3 (14-304)||(24281405-24281695)


Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 14 - 304
Target Start/End: Original strand, 24281405 - 24281695
Alignment:
Q  14 agacggtcatcattagcaaatcatcattcttaacaccaagggcactcaatttctgggaattgctcacctcattcccattgaacagaatctgttgttgctg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  24281405 agacggtcatcattagcaaatcatcattcttaacaccaagggcactcaatttctgggaattgcccacctcattcccattgaacagaatctgttgttgctg 24281504  T
Q  114 aataggcacacttgtcttttcataacacaagtttaacatcaaacaaacacaattagtaagccaaccacaaattaaaaccatataagattcaacatcactt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24281505 aataggcacacttgtcttttcataacacaagtttaacatcaaacaaacacaattagtaagccaaccacaaattaaaaccatataagattcaacatcactt 24281604  T
Q  214 gttatctcaaatttaaacacatgaatcaatcaccaatataatcaaaaagataatctcatatcggattaaatttctaggttataatgatgat 304  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  24281605 gttatctcaaatttaaacacatgaatcaaccaccaatataatcaaaaagataatctcatatgggattaaatttctaggttataataatgat 24281695  T

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