View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1318_low_99 (Length: 314)

Name: NF1318_low_99
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1318_low_99
NF1318_low_99
[»] chr8 (14 HSPs)
chr8 (30-305)||(4825273-4825548)
chr8 (36-137)||(10451230-10451331)
chr8 (36-137)||(10455656-10455757)
chr8 (30-135)||(4720017-4720122)
chr8 (50-135)||(4722721-4722806)
chr8 (50-139)||(4693794-4693883)
chr8 (50-135)||(4730941-4731026)
chr8 (31-137)||(4886200-4886306)
chr8 (50-114)||(4741624-4741688)
chr8 (30-124)||(4709824-4709918)
chr8 (41-123)||(4865464-4865546)
chr8 (244-305)||(4856313-4856374)
chr8 (41-135)||(4755047-4755140)
chr8 (50-123)||(4896713-4896786)


Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 30 - 305
Target Start/End: Complemental strand, 4825548 - 4825273
Alignment:
Q  30 gtggaggcacaagagctatggatgaattggtttctgtagctactatatcagaaagcactatttcagctagataactaccatttatgatcatatttttgtc 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4825548 gtggaggcacaagagctatggatgaattggtttctgtagctactatatcagaaagcactatttcagctagataactaccatttatgatcatatttttgtc 4825449  T
Q  130 ctatatatattcactatcattaaatgtcctaaaacattagtccttgttatatgttatatactaatttgtattctaaaagttttgcaggaatnnnnnnntt 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||    
T  4825448 ctatatatattcactatcattaaatgtcctaaaacattagtccttgttatatgttatatactaatttgtattctaaaagttttgcaggaataaaaaaatt 4825349  T
Q  230 gggttccaatcactatagtattagtgattcttaattaaacacactcatctcgtcctaaactatcagaaagaataat 305  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  4825348 gggttccaatcactatagtattagtgattcttaattaaacacacccatctcgtcctaaactatcagaaagaataat 4825273  T

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Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 36 - 137
Target Start/End: Original strand, 10451230 - 10451331
Alignment:
Q  36 gcacaagagctatggatgaattggtttctgtagctactatatcagaaagcactatttcagctagataactaccatttatgatcatatttttgtcctatat 135  Q
    |||| |||||||  ||||||||||||||| |||||||||||||||||| |||||||| ||||||||||| ||||||||| || |||||||||| ||| ||    
T  10451230 gcacgagagctagagatgaattggtttctatagctactatatcagaaaccactattttagctagataaccaccatttataatgatatttttgtgctacat 10451329  T
Q  136 at 137  Q
    ||    
T  10451330 at 10451331  T

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Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 36 - 137
Target Start/End: Original strand, 10455656 - 10455757
Alignment:
Q  36 gcacaagagctatggatgaattggtttctgtagctactatatcagaaagcactatttcagctagataactaccatttatgatcatatttttgtcctatat 135  Q
    |||| |||||||  ||||||||||||||| |||||||||||||||||| |||||||| ||||||||||| ||||||||| || |||||||||| ||| ||    
T  10455656 gcacgagagctagagatgaattggtttctatagctactatatcagaaaccactattttagctagataaccaccatttataatgatatttttgtgctacat 10455755  T
Q  136 at 137  Q
    ||    
T  10455756 at 10455757  T

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Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 135
Target Start/End: Original strand, 4720017 - 4720122
Alignment:
Q  30 gtggaggcacaagagctatggatgaattggtttctgtagctactatatcagaaagcactatttcagctagataactaccatttatgatcatatttttgtc 129  Q
    ||||| |||||||| |||  ||||||||||||||| | |||||| ||||||||| |||||||| ||||||||||| |||  |||| || |||||||||||    
T  4720017 gtggaagcacaagatctagagatgaattggtttctttcgctactgtatcagaaaccactattttagctagataaccacccattataattatatttttgtc 4720116  T
Q  130 ctatat 135  Q
    ||||||    
T  4720117 ctatat 4720122  T

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Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 50 - 135
Target Start/End: Original strand, 4722721 - 4722806
Alignment:
Q  50 gatgaattggtttctgtagctactatatcagaaagcactatttcagctagataactaccatttatgatcatatttttgtcctatat 135  Q
    ||||| |||||||||||||||||  ||||||||| |||||||| ||||||||||| |||| ||||||| ||||||||||| |||||    
T  4722721 gatgacttggtttctgtagctaccgtatcagaaaccactattttagctagataaccaccacttatgattatatttttgtcatatat 4722806  T

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Target: chr8; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 50 - 139
Target Start/End: Original strand, 4693794 - 4693883
Alignment:
Q  50 gatgaattggtttctgtagctactatatcagaaagcactatttcagctagataactaccatttatgatcatatttttgtcctatatatat 139  Q
    |||||||||||||||||||||||| |||||| |  |||| ||| ||||||||||| ||| | ||| || |||||||||||||||||||||    
T  4693794 gatgaattggtttctgtagctactgtatcagtatccacttttttagctagataaccaccgtctataatgatatttttgtcctatatatat 4693883  T

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Target: chr8; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 50 - 135
Target Start/End: Original strand, 4730941 - 4731026
Alignment:
Q  50 gatgaattggtttctgtagctactatatcagaaagcactatttcagctagataactaccatttatgatcatatttttgtcctatat 135  Q
    |||||||| ||||||||||||||||||||||||  |||||||| |||||||||||  | |||||| || |||||||||| ||||||    
T  4730941 gatgaatttgtttctgtagctactatatcagaatccactattttagctagataaccccaatttataatgatatttttgttctatat 4731026  T

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Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 137
Target Start/End: Complemental strand, 4886306 - 4886200
Alignment:
Q  31 tggaggcacaagagctatggatgaattggtttctgtagctactatatcagaaagcactatttcagctagataactaccatttatgatcatatttttgtcc 130  Q
    |||| ||||||||||||| |||||  || ||||| |||||||| |||| |||| |||| |||||||| |||||| ||||||||| || || | |||||||    
T  4886306 tggaagcacaagagctatagatgatatgatttctttagctactgtatctgaaaccactctttcagctcgataaccaccatttataatgatctctttgtcc 4886207  T
Q  131 tatatat 137  Q
    |||||||    
T  4886206 tatatat 4886200  T

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Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 4741624 - 4741688
Alignment:
Q  50 gatgaattggtttctgtagctactatatcagaaagcactatttcagctagataactaccatttat 114  Q
    |||||||||||||||||||||||| ||||||||| || | |||||| |||||||| |||||||||    
T  4741624 gatgaattggtttctgtagctactgtatcagaaaccagtctttcaggtagataaccaccatttat 4741688  T

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Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 124
Target Start/End: Original strand, 4709824 - 4709918
Alignment:
Q  30 gtggaggcacaagagctatggatgaattggtttctgtagctactatatcagaaagcactatttcagctagataactaccatttatgatcatattt 124  Q
    ||||| |||||||| |||  ||||||||||||||| |||||| |  |||||||| | |||||| ||||||||||| | |||||||||| ||||||    
T  4709824 gtggaagcacaagatctagagatgaattggtttctttagctattgaatcagaaaccgctattttagctagataaccatcatttatgataatattt 4709918  T

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Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 41 - 123
Target Start/End: Complemental strand, 4865546 - 4865464
Alignment:
Q  41 agagctatggatgaattggtttctgtagctactatatcagaaagcactatttcagctagataactaccatttatgatcatatt 123  Q
    |||||||  ||||||||||||||||| |||||| ||||||||| | |||||| |||||| |||| |||| ||||||| |||||    
T  4865546 agagctagagatgaattggtttctgttgctactgtatcagaaaccgctattttagctaggtaaccaccacttatgatgatatt 4865464  T

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Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 305
Target Start/End: Complemental strand, 4856374 - 4856313
Alignment:
Q  244 atagtattagtgattcttaattaaacacactcatctcgtcctaaactatcagaaagaataat 305  Q
    ||||||||| |||| |||||||||| |||||||| || ||||||||||| ||||||||||||    
T  4856374 atagtattattgatgcttaattaaaaacactcatttcctcctaaactattagaaagaataat 4856313  T

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Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 135
Target Start/End: Original strand, 4755047 - 4755140
Alignment:
Q  41 agagctatggatgaattggtttctgtagctactatatcagaaagcactatttcagctagataactaccatttatgatcatatttttgtcctatat 135  Q
    |||||||  |||||||| |||||| |||||||| ||||||||  ||| |||| ||||||||||| | ||||||| || |||||||| ||||||||    
T  4755047 agagctacagatgaatttgtttctatagctactgtatcagaatccaccattttagctagataac-aacatttataatgatatttttctcctatat 4755140  T

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Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 123
Target Start/End: Complemental strand, 4896786 - 4896713
Alignment:
Q  50 gatgaattggtttctgtagctactatatcagaaagcactatttcagctagataactaccatttatgatcatatt 123  Q
    ||||||||||||| |||||||||| ||||||||| || |  || ||||||||||| ||||||||| || |||||    
T  4896786 gatgaattggtttatgtagctactgtatcagaaaccattcctttagctagataaccaccatttataattatatt 4896713  T

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