View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13190_high_4 (Length: 540)

Name: NF13190_high_4
Description: NF13190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13190_high_4
NF13190_high_4
[»] chr5 (11 HSPs)
chr5 (14-533)||(1724304-1724824)
chr5 (119-408)||(1760070-1760359)
chr5 (30-386)||(1739041-1739397)
chr5 (20-390)||(1744380-1744750)
chr5 (14-119)||(1724857-1724962)
chr5 (28-125)||(1725118-1725221)
chr5 (269-357)||(1763478-1763566)
chr5 (20-120)||(1739478-1739578)
chr5 (20-109)||(1760559-1760648)
chr5 (59-170)||(1763591-1763702)
chr5 (20-103)||(1744832-1744915)
[»] chr3 (6 HSPs)
chr3 (45-388)||(3167258-3167610)
chr3 (25-388)||(2022810-2023182)
chr3 (271-408)||(3156895-3157032)
chr3 (271-372)||(3139181-3139282)
chr3 (42-87)||(3138955-3139000)
chr3 (119-171)||(3156752-3156804)
[»] chr8 (1 HSPs)
chr8 (271-384)||(23852148-23852261)
[»] chr7 (4 HSPs)
chr7 (271-339)||(7491189-7491257)
chr7 (299-339)||(7498938-7498978)
chr7 (271-370)||(9012035-9012134)
chr7 (283-385)||(7484447-7484549)


Alignment Details
Target: chr5 (Bit Score: 449; Significance: 0; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 14 - 533
Target Start/End: Complemental strand, 1724824 - 1724304
Alignment:
Q  14 ccaactccactattattattactaccctccatatttctcaaactaacaagagaagggtttaacatctcttgcaaacccaaagcaccattattatacccaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1724824 ccaactccactattattattactaccctccatatttctcaaactaacaagagaagggtttaacatctcttgcaaacccaaagcaccattattatacccaa 1724725  T
Q  114 aagggccaaaactatgtgaggtaatcccagggctaatgtaagatggtttttgaatcatagattccattctaacgccgagtttccgataataagaggatgt 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  1724724 aagggccaaaactatgtgaggtaatcccagggctaatgtaagatggattttgaatcatagattccactctaacgccgagtttccgataataaggggatgt 1724625  T
Q  214 aaaaaagctatttggataactaaaataagggttaaagtgaggttctcctaaacctaaatcataccttagtttacgttgcttttttaatgcacgttctgcc 313  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1724624 aaaaaagctatttggataactaaaataaaggttaaagtgaggttctcctaaacctaaatcataccttagtttacgttgcttttttaatgcacgttctgcc 1724525  T
Q  314 ttatgagcattttggtgccctcctaacgcctgtgaagtagaaaattttctcttgcaaaataagcatgaaaaagacctcgagtccaaattcttctcgtcgt 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  1724524 ttatgagcattttggtgccctcctaacgcctgtgaagtagaaaattttctcttgcaaaataagcatgaaaaagacctcaagttcaaattcttctcgtcgt 1724425  T
Q  414 tgtttttctcacttttttcttcgttgttcttagaaaaacaagatgctgaacccacttgtatattgct-nnnnnnnncgtgctttggcacctttgatccgt 512  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||     
T  1724424 tgtttttctcacttttttcttccttgttcttagaaaaacaagatgctgaacccacttgtatattgctaaaaaaaaccgtgctttggcacctttgatccgc 1724325  T
Q  513 gaatcgaatcatcctttgata 533  Q
     |||||||||||| |||||||    
T  1724324 aaatcgaatcatcttttgata 1724304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 119 - 408
Target Start/End: Complemental strand, 1760359 - 1760070
Alignment:
Q  119 ccaaaactatgtgaggtaatcccagggctaatgtaagatggtttttgaatcatagattccattctaacgccgagtttccgataataagaggatgtaaaaa 218  Q
    |||||||||||||| ||||||| |||| |||| | |||||||||||| ||||||| |||||||| ||| ||||||  || |||||| |||| ||||||||    
T  1760359 ccaaaactatgtgacgtaatcctagggttaatatcagatggtttttggatcataggttccattccaacaccgagtgccctataatacgagggtgtaaaaa 1760260  T
Q  219 agctatttggataactaaaataagggttaaagtgaggttctcctaaacctaaatcataccttagtttacgttgcttttttaatgcacgttctgccttatg 318  Q
    |  ||| |||||||||||||||||||||||| |||||||  ||||||||||| || |||||| ||||||||||||||| |||||||||||| |||||||     
T  1760259 aagtatctggataactaaaataagggttaaaatgaggttaccctaaacctaattcctacctttgtttacgttgcttttctaatgcacgttccgccttata 1760160  T
Q  319 agcattttggtgccctcctaacgcctgtgaagtagaaaattttctcttgcaaaataagcatgaaaaagacctcgagtccaaattcttctc 408  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||| || |||||||| |||||    
T  1760159 agcattttggtgccctcccaacgcctgtgaagtagtaaattttctcttgcaaaataaacatgaaaaagaccttgaatccaaatttttctc 1760070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 30 - 386
Target Start/End: Complemental strand, 1739397 - 1739041
Alignment:
Q  30 tattactaccctccatatttctcaaactaacaagagaagggtttaacatctcttgcaaacccaaagcaccattattatacccaaaagggccaaaactatg 129  Q
    ||||||||| |||||| |||||||||| |||||||||||| ||||| || |||| ||||  |||| |||||||| ||||| ||||||||||||||| |||    
T  1739397 tattactactctccatgtttctcaaaccaacaagagaaggatttaatatatctttcaaatgcaaatcaccattactatactcaaaagggccaaaaccatg 1739298  T
Q  130 tgaggtaatcccagggctaatgtaagatggtttttgaatcatagattccattctaacgccgagtttccgataataagaggatgtaaaaaagctatttgga 229  Q
    || || ||||| |||| |||| ||||||||||||||||||||||||||||||||||| ||||||  ||  |||| || || |||||||||  | |||||     
T  1739297 tggggcaatcctagggttaatataagatggtttttgaatcatagattccattctaacaccgagtgccccgtaattagggggtgtaaaaaaagtgtttggg 1739198  T
Q  230 taactaaaataagggttaaagtgaggttctcctaaacctaaatcataccttagtttacgttgcttttttaatgcacgttctgccttatgagcattttggt 329  Q
    || | ||||||||||||||   ||||||  ||||||||||| ||||||||| ||||| |||||||||  || |||||||||||||||||||| |||||||    
T  1739197 tagcaaaaataagggttaagaagaggttgccctaaacctaattcatacctttgtttaagttgcttttgcaacgcacgttctgccttatgagcgttttggt 1739098  T
Q  330 gccctcctaacgcctgtgaagtagaaaattttctcttgcaaaataagcatgaaaaag 386  Q
    | || |||||||| || |||||||||||||||| |||||||||||||||||||||||    
T  1739097 gtccacctaacgcttgcgaagtagaaaattttcccttgcaaaataagcatgaaaaag 1739041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 20 - 390
Target Start/End: Complemental strand, 1744750 - 1744380
Alignment:
Q  20 ccactattattattactaccctccatatttctcaaactaacaagagaagggtttaacatctcttgcaaacccaaagcaccattattatacccaaaagggc 119  Q
    |||| |||| ||||||||| |||||| ||||||||||||| ||||||||| ||||| || ||||  |||   ||| |||||||| ||||| |||||||||    
T  1744750 ccacgattactattactactctccatgtttctcaaactaataagagaaggatttaatatatcttttaaatgaaaatcaccattactatactcaaaagggc 1744651  T
Q  120 caaaactatgtgaggtaatcccagggctaatgtaagatggtttttgaatcatagattccattctaacgccgagtttccgataataagaggatgtaaaaaa 219  Q
    |||||| ||||| ||||||||| ||| |||| ||||||||||||||||||||||||||||||||||| ||||||  || ||||| || || ||||||||     
T  1744650 caaaaccatgtggggtaatcccggggttaatataagatggtttttgaatcatagattccattctaacaccgagtgccccataattagggggtgtaaaaag 1744551  T
Q  220 gctatttggataactaaaataagggttaaagtgaggttctcctaaacctaaatcataccttagtttacgttgcttttttaatgcacgttctgccttatga 319  Q
      | |||||||||||||||||||||||||   |||| |   ||||||||||  | ||| |  ||||| ||||||||| |||||||||||| | |||||||    
T  1744550 agtgtttggataactaaaataagggttaagaagaggctgctctaaacctaatacgtacttctgtttaagttgcttttgtaatgcacgttccgtcttatga 1744451  T
Q  320 gcattttggtgccctcctaacgcctgtgaagtagaaaattttctcttgcaaaataagcatgaaaaagacct 390  Q
    || |||||||| || |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  1744450 gcgttttggtgtccacctaacgcttgtgaagtagaaaattttcccttgcaaaataagcatgaaaaagacct 1744380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 14 - 119
Target Start/End: Complemental strand, 1724962 - 1724857
Alignment:
Q  14 ccaactccactattattattactaccctccatatttctcaaactaacaagagaagggtttaacatctcttgcaaacccaaagcaccattattatacccaa 113  Q
    |||||||||||| || |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  1724962 ccaactccactagtactattactaccctccatatttttcaaactaacaaaagaagggtttaacatctcttgcaaacccaaagtaccattactatacccaa 1724863  T
Q  114 aagggc 119  Q
    ||||||    
T  1724862 aagggc 1724857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 28 - 125
Target Start/End: Complemental strand, 1725221 - 1725118
Alignment:
Q  28 attattactaccctccatatttctcaaactaacaagag------aagggtttaacatctcttgcaaacccaaagcaccattattatacccaaaagggcca 121  Q
    ||||| ||||| ||||||||||||||||||||||||||      |||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||    
T  1725221 attataactactctccatatttctcaaactaacaagaggaagagaagggtttaacatctcttgcaaacacaaagcaccattactatacccaaaaggacca 1725122  T
Q  122 aaac 125  Q
    ||||    
T  1725121 aaac 1725118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 269 - 357
Target Start/End: Original strand, 1763478 - 1763566
Alignment:
Q  269 aaatcataccttagtttacgttgcttttttaatgcacgttctgccttatgagcattttggtgccctcctaacgcctgtgaagtagaaaa 357  Q
    |||||||||||| ||||||||||||||| ||||||| |||| ||||||||||| ||||| |||||||||||||  ||||||||||||||    
T  1763478 aaatcatacctttgtttacgttgcttttctaatgcatgttccgccttatgagctttttgatgccctcctaacgtatgtgaagtagaaaa 1763566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 1739578 - 1739478
Alignment:
Q  20 ccactattattattactaccctccatatttctcaaactaacaagagaagggtttaacatctcttgcaaacccaaagcaccattattatacccaaaagggc 119  Q
    ||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||| || |||| |||||  ||||||||||||  |||||| ||| |||    
T  1739578 ccactattactattgctaccctccatatttctcaaactaacaagcgaagggtttaatatatctttcaaacataaagcaccattaccataccctaaatggc 1739479  T
Q  120 c 120  Q
    |    
T  1739478 c 1739478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 1760648 - 1760559
Alignment:
Q  20 ccactattattattactaccctccatatttctcaaactaacaagagaagggtttaacatctcttgcaaacccaaagcaccattattatac 109  Q
    ||||||||| |||||| |||||| | |||||||| ||||||||||||||||||||| ||||||| ||||| |||| |||||||| |||||    
T  1760648 ccactattactattacaaccctcaaaatttctcagactaacaagagaagggtttaatatctctttcaaactcaaaacaccattactatac 1760559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 59 - 170
Target Start/End: Complemental strand, 1763702 - 1763591
Alignment:
Q  59 acaagagaagggtttaacatctcttgcaaacccaaagcaccattattatacccaaaagggccaaaactatgt-gaggtaatcccagggctaatgtaagat 157  Q
    |||||| || ||||||| ||||||||||| | |||| |||||||| |||| ||||||||||||||||||||| |||||| ||  || | |||| ||||||    
T  1763702 acaagaaaaaggtttaatatctcttgcaa-cacaaaacaccattactatatccaaaagggccaaaactatgtggaggtagtcatagagttaatataagat 1763604  T
Q  158 ggtttttgaatca 170  Q
    |||||||||||||    
T  1763603 ggtttttgaatca 1763591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 1744915 - 1744832
Alignment:
Q  20 ccactattattattactaccctccatatttctcaaactaacaagagaagggtttaacatctcttgcaaacccaaagcaccatta 103  Q
    ||||||||| |||| ||||||| | ||||||||||||||| ||| ||||||||||| || |||| |||||  ||||||||||||    
T  1744915 ccactattactattgctacccttcgtatttctcaaactaaaaagtgaagggtttaatatatctttcaaacataaagcaccatta 1744832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 141; Significance: 1e-73; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 45 - 388
Target Start/End: Complemental strand, 3167610 - 3167258
Alignment:
Q  45 tatttctcaaactaacaagagaagggtttaacatctcttgcaaacccaaagcaccattattatacccaaaagggccaaaactatgtgaggtaatcccagg 144  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||   ||||||||||||| ||||||||||||||||||||||||||  ||||||| |||    
T  3167610 tatttctcaaactaacaagtgaagggtttaatatctcttgcaaagataaagcaccattatcatacccaaaagggccaaaactatgtggagtaatcctagg 3167511  T
Q  145 gctaatgtaagatggtttttgaatcatagattccattctaacgccgagtttccgataataagaggatgtaaaaaagctatttggataactaaaataaggg 244  Q
    | |||| |||||||| ||||||||||| ||||||||||||   || ||   |  ||||||||||| ||||||||   |||||||||||||||||||||||    
T  3167510 gttaatataagatggcttttgaatcatggattccattctagttccaagccccttataataagagggtgtaaaaagagtatttggataactaaaataaggg 3167411  T
Q  245 ttaaagtgaggttctcctaaacctaaa---------tcataccttagtttacgttgcttttttaatgcacgttctgccttatgagcattttggtgccctc 335  Q
    ||||||| |||||  |||||||| |||         |||||| || |||||||||| |||| ||| |||||||| |||||||| ||||| || || ||||    
T  3167410 ttaaagtaaggttgccctaaaccaaaaacaccattttcatacttttgtttacgttgtttttctaaggcacgttcagccttatgggcattctgatgtcctc 3167311  T
Q  336 ctaacgcctgtgaagtagaaaattttctcttgcaaaataagcatgaaaaagac 388  Q
    ||||||| ||||| |||||||||||||||||||||||  | ||||||||||||    
T  3167310 ctaacgcttgtgatgtagaaaattttctcttgcaaaaacaacatgaaaaagac 3167258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 25 - 388
Target Start/End: Complemental strand, 2023182 - 2022810
Alignment:
Q  25 attattattactaccctccatatttctcaaactaacaagagaagggtttaacatctcttgcaaacccaaagcaccattattatacccaaaagggccaaaa 124  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||  |||||||||||| | ||||    
T  2023182 attactattactgccctccatatttctcaaactaacaagagaagggtttaatatctcttgcaaacccaaaccaccattaccatacccaaaaggtctaaaa 2023083  T
Q  125 ctatgtgaggtaatcccagggctaatgtaagatggtttttgaatcatagattccattctaacgccgagtttccgataataagaggatgtaaaaaagctat 224  Q
    |||||||  ||||| | |||| ||||  ||  ||||||||||||||| ||||||||||||   || | |   | | |||||| |  ||||||||   ||     
T  2023082 ctatgtggagtaattctagggttaataaaaagtggtttttgaatcatggattccattctagtcccaattgcgctaaaataagggcgtgtaaaaagagtac 2022983  T
Q  225 ttggataactaaaataagggttaaagtgaggttctcctaaacctaaa---------tcataccttagtttacgttgcttttttaatgcacgttctgcctt 315  Q
    |||||||||||||||||||||||||||||||||  |||||||| |||         ||||||||| |||||||||| |||| ||| | |||||| |||||    
T  2022982 ttggataactaaaataagggttaaagtgaggttgccctaaaccaaaagcaccactttcatacctttgtttacgttgtttttctaacgtacgttcagcctt 2022883  T
Q  316 atgagcattttggtgccctcctaacgcctgtgaagtagaaaattttctcttgcaaaataagcatgaaaaagac 388  Q
    ||| ||||| ||||| |||||||| || || ||||||||||||||||||||||||||  | ||||||||||||    
T  2022882 atgggcattctggtgtcctcctaaggcttgcgaagtagaaaattttctcttgcaaaaacaacatgaaaaagac 2022810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 271 - 408
Target Start/End: Original strand, 3156895 - 3157032
Alignment:
Q  271 atcataccttagtttacgttgcttttttaatgcacgttctgccttatgagcattttggtgccctcctaacgcctgtgaagtagaaaattttctcttgcaa 370  Q
    |||||||||| |||| |||||||||| ||| |||||||| ||||||||||| || ||||| ||||| ||||| |||||||||||||||| |||||| |||    
T  3156895 atcatacctttgtttccgttgcttttctaaagcacgttccgccttatgagcgttctggtgtcctcccaacgcttgtgaagtagaaaattgtctcttacaa 3156994  T
Q  371 aataagcatgaaaaagacctcgagtccaaattcttctc 408  Q
    ||  |||||||||||||||| || ||| ||||||||||    
T  3156995 aaggagcatgaaaaagaccttgaatccgaattcttctc 3157032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 271 - 372
Target Start/End: Original strand, 3139181 - 3139282
Alignment:
Q  271 atcataccttagtttacgttgcttttttaatgcacgttctgccttatgagcattttggtgccctcctaacgcctgtgaagtagaaaattttctcttgcaa 370  Q
    |||||||||| ||| ||||||||||| |||||| ||||| |||||||| || || || || ||||| |||||||||||||||||||||| ||||||||||    
T  3139181 atcatacctttgttgacgttgcttttctaatgcccgttccgccttatgtgcgttctgatgtcctcccaacgcctgtgaagtagaaaattgtctcttgcaa 3139280  T
Q  371 aa 372  Q
    ||    
T  3139281 aa 3139282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 3138955 - 3139000
Alignment:
Q  42 ccatatttctcaaactaacaagagaagggtttaacatctcttgcaa 87  Q
    |||||||||||||    |||||||||||||||||||||||||||||    
T  3138955 ccatatttctcaatgacacaagagaagggtttaacatctcttgcaa 3139000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 3156752 - 3156804
Alignment:
Q  119 ccaaaactatgtgaggtaatcccagggctaatgtaagatggtttttgaatcat 171  Q
    |||||||| |||| |||||||  ||||||||| |||| |||||||||||||||    
T  3156752 ccaaaactgtgtggggtaatcttagggctaatataaggtggtttttgaatcat 3156804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 271 - 384
Target Start/End: Complemental strand, 23852261 - 23852148
Alignment:
Q  271 atcataccttagtttacgttgcttttttaatgcacgttctgccttatgagcattttggtgccctcctaacgcctgtgaagtagaaaattttctcttgcaa 370  Q
    |||||||||| |||| |||||||||| ||| | |||||| ||||||||||| || ||||| ||||| ||||| || |||||||||||||  ||||| |||    
T  23852261 atcatacctttgtttccgttgcttttctaaagtacgttccgccttatgagcgttctggtgtcctcccaacgcttgagaagtagaaaattgcctcttacaa 23852162  T
Q  371 aataagcatgaaaa 384  Q
    ||  ||||||||||    
T  23852161 aaggagcatgaaaa 23852148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 271 - 339
Target Start/End: Original strand, 7491189 - 7491257
Alignment:
Q  271 atcataccttagtttacgttgcttttttaatgcacgttctgccttatgagcattttggtgccctcctaa 339  Q
    ||||||||||  ||||||||| ||||  || |||||||| |||||||| |||||||| |||||||||||    
T  7491189 atcatacctttctttacgttgtttttccaacgcacgttccgccttatgggcattttgatgccctcctaa 7491257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 299 - 339
Target Start/End: Original strand, 7498938 - 7498978
Alignment:
Q  299 aatgcacgttctgccttatgagcattttggtgccctcctaa 339  Q
    |||||||||||||||||||| |||||||| |||||||||||    
T  7498938 aatgcacgttctgccttatgggcattttgatgccctcctaa 7498978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 370
Target Start/End: Original strand, 9012035 - 9012134
Alignment:
Q  271 atcataccttagtttacgttgcttttttaatgcacgttctgccttatgagcattttggtgccctcctaacgcctgtgaagtagaaaattttctcttgcaa 370  Q
    |||||||||| ||| || ||||||||  |||||||||||     |||| |||||||||||||| || ||||| |||| |||||||||||||  |||||||    
T  9012035 atcatacctttgttgacattgcttttcaaatgcacgttcctttctatgggcattttggtgcccacccaacgcttgtgcagtagaaaattttgccttgcaa 9012134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 283 - 385
Target Start/End: Original strand, 7484447 - 7484549
Alignment:
Q  283 tttacgttgcttttttaatgcacgttctgccttatgagcattttggtgccctcctaacgcctgtgaagtagaaaattttctcttgcaaaataagcatgaa 382  Q
    ||||||||| ||||  | |||||||||||| ||||| |||||||| ||||||| |||| | ||| |||||||| |||  | ||||||| |  ||||||||    
T  7484447 tttacgttgtttttccattgcacgttctgctttatgggcattttgatgccctcttaacccttgtaaagtagaatattgccccttgcaataggagcatgaa 7484546  T
Q  383 aaa 385  Q
    |||    
T  7484547 aaa 7484549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University