View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13190_high_6 (Length: 405)
Name: NF13190_high_6
Description: NF13190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13190_high_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 17 - 393
Target Start/End: Complemental strand, 3076279 - 3075900
Alignment:
| Q |
17 |
tcggaacaatggatcaagatgatcatgtggatagttttatttatagatttattttaattctttagtggcttcttcttcnnnnnnnnnngtggtacattta |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
3076279 |
tcggaacaatggatcaagatgatcatgtggatagttttatttatggatttattttaattctttagtggtttcttcttctttttttt--gtggtacattta |
3076182 |
T |
|
| Q |
117 |
gtggtatctttttctgtgtttggtgtatattatgatataagaaattaaacgagagccattgttacactacaaagaaatacatgacaagttagagttatta |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
3076181 |
gtggtatctttttctgtgtttggtgtatattatgatattagaaattaaacgagagccattgttacactacaaagaaatacatgacaacttagagttatta |
3076082 |
T |
|
| Q |
217 |
ttnnnnnnnnn-----gttagttattatagcaaacccaaacttacagtgaatacttattgcgattaagctcgtatgattgtagcataattgtttaaaatt |
311 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3076081 |
ttcgttcaaaaaaaaagttagttattatagcaaacccaaacttacagtggatacttactgcgattaagctcgtatgattgtagcataattgtttaaaatt |
3075982 |
T |
|
| Q |
312 |
gccttaagattttgagttaaagtgtcgtgtccaactcaatcgtgtggttgctctgagctctacctcattgatcctgaaaatt |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
3075981 |
gccttaagattttgagttaaagtgtcgtgtccaactcaatcgtgtggttgctctgagctctacctcaatgatcctgaaaatt |
3075900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 367
Target Start/End: Original strand, 2336706 - 2336762
Alignment:
| Q |
311 |
tgccttaagattttgagttaaagtgtcgtgtccaactcaatcgtgtggttgctctga |
367 |
Q |
| |
|
||||||||||||||| ||||| ||| |||||||||||| | ||||||||||||||| |
|
|
| T |
2336706 |
tgccttaagattttgggttaagatgtggtgtccaactcacttgtgtggttgctctga |
2336762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University