View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13190_low_10 (Length: 387)
Name: NF13190_low_10
Description: NF13190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13190_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 12 - 373
Target Start/End: Complemental strand, 48881187 - 48880826
Alignment:
| Q |
12 |
catcatcgattacgatgcaaaactcgacgctgcaaagaacgaaaaccacctcatgaagttgtatgaatcgtggttgatgaagcatggtaaggtttataat |
111 |
Q |
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| T |
48881187 |
catcatcgactacgatgcaaaactcgatgctgcaaagaacgaaaaccacctcatgaagttgtatgaatcgtggttgatgaagcatggtaaggtttataat |
48881088 |
T |
|
| Q |
112 |
gcattaggtgagaaagtacatcgatttgaaatctttaaggacaaccttaggtatatcgaaaaccataacaacaatgaaaaccactccttcaagttgggtc |
211 |
Q |
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| T |
48881087 |
gcattaggtgagaaagtacgtcgatttgaaatctttaaggacaaccttaggtatattgaaaaccataacaattttgaaaaccactccttcaagttgggtc |
48880988 |
T |
|
| Q |
212 |
tcacaaagtttgctgatcttaccaatgaagaatatcgttccatgtttttgggtacacgacctcggaaatccaaagggttgttgtctgcttccaagagcga |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
48880987 |
tcacaaagtttgctgatcttaccaatgaagaatatcgttccatgtttttgggtacacgacctcggaaatccaaagggttgttgtctgcttccaagagtga |
48880888 |
T |
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| Q |
312 |
tcgttatgctattcgtgataacgatgaattgccagagcacgttgattggagggagaaaggtg |
373 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48880887 |
tcgttatgctattcgtgataacgatgaattgccagagcacgttgattggagggagaaaggtg |
48880826 |
T |
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