View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13190_low_12 (Length: 321)
Name: NF13190_low_12
Description: NF13190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13190_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 176; Significance: 8e-95; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 121 - 304
Target Start/End: Original strand, 3076434 - 3076617
Alignment:
| Q |
121 |
ggcgtggagcaataaatcacgattcttgtttgtgtgttagtggatgtggctctctagaaaatgtcaatcacttattttttcactgctcattttttggttc |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3076434 |
ggcgtggagcaataaatcacgattcttgtttgtgtgttagtgggtgtggctctctagaaactgtcaatcacttattttttcactgctcattttttggttc |
3076533 |
T |
|
| Q |
221 |
ggtttggaactatattcttcaatggattggtctttctatggatctaccgttcgttgcttcagatcatttcaaccaatttggttt |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3076534 |
ggtttggaactatattcttcaatggattggtctttctatggatctaccgttcgttgcttcagatcatttcaaccaatttggttt |
3076617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 3076290 - 3076407
Alignment:
| Q |
1 |
cacaacgggatcatataatttaaataagtattcacaatgggacaatatcagatttaaatgccaaaagcttcaaatcaattgatttgctcacgagtgctcg |
100 |
Q |
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||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3076290 |
cacaacgggattatcgaatttaaataagtattcacaatgggacaatatcagatttaaatgccaaaagcttcaaatcaattgatttgcttacgagtgctcg |
3076389 |
T |
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| Q |
101 |
gcgtctgtttcggaatag |
118 |
Q |
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|||||||||||||||||| |
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| T |
3076390 |
gcgtctgtttcggaatag |
3076407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 141 - 199
Target Start/End: Complemental strand, 19153715 - 19153657
Alignment:
| Q |
141 |
gattcttgtttgtgtgttagtggatgtggctctctagaaaatgtcaatcacttattttt |
199 |
Q |
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| T |
19153715 |
gattcttgtctgtgtgttactggatgtggctctctagaaactgtcaatcatttattttt |
19153657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 141 - 229
Target Start/End: Original strand, 24638893 - 24638981
Alignment:
| Q |
141 |
gattcttgtttgtgtgttagtggatgtggctctctagaaaatgtcaatcacttattttttcactgctcattttttggttcggtttggaa |
229 |
Q |
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||||||||| | ||||||| || |||||||||||| ||| ||||||||| |||||||| || |||||||||||||| | ||||||||| |
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| T |
24638893 |
gattcttgtctctgtgttactgaatgtggctctctgaaaactgtcaatcatttatttttacattgctcattttttgggttggtttggaa |
24638981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 144 - 304
Target Start/End: Complemental strand, 27099966 - 27099809
Alignment:
| Q |
144 |
tcttgtttgtgtgttagtggatgtggctctctagaaaatgtcaatcacttattttttcactgctcattttttggttcggtttggaactatattcttcaat |
243 |
Q |
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|||||||||||||||| ||| |||||||||| |||| |||||||||||||||| |||| ||||| ||||||||| ||||||||||||| |||||||||| |
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| T |
27099966 |
tcttgtttgtgtgttactgg--gtggctctctggaaactgtcaatcacttatttcttcattgctcgttttttggt-cggtttggaactacattcttcaat |
27099870 |
T |
|
| Q |
244 |
ggattggtctttctatggatctaccgttcgttgcttcagatcatttcaaccaatttggttt |
304 |
Q |
| |
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||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
27099869 |
ggatttgtctttctatggttctaccgttcgttgcttcaggtcatttcaaccaatttggttt |
27099809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 121 - 304
Target Start/End: Complemental strand, 3926993 - 3926810
Alignment:
| Q |
121 |
ggcgtggagcaataaatcacgattcttgtttgtgtgttagtggatgtggctctctagaaaatgtcaatcacttattttttcactgctcattttttggttc |
220 |
Q |
| |
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||||||| ||||||||||| || ||||| |||||||||| ||| |||||||||| |||| |||||||||||||||| |||| || || |||||||| || |
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| T |
3926993 |
ggcgtggtgcaataaatcatgactcttgcttgtgtgttactgggtgtggctctcaggaaactgtcaatcacttatttcttcattgttcgttttttgggtc |
3926894 |
T |
|
| Q |
221 |
ggtttggaactatattcttcaatggattggtctttctatggatctaccgttcgttgcttcagatcatttcaaccaatttggttt |
304 |
Q |
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|
||| ||||| || ||||||||||||||||||||| ||| ||| ||||||||| | | ||||||||||||| ||||| ||||| |
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| T |
3926893 |
ggtctggaattacgttcttcaatggattggtctttttatagatttaccgttcggtacaacagatcatttcaatcaattcggttt |
3926810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 234 - 298
Target Start/End: Original strand, 5717066 - 5717130
Alignment:
| Q |
234 |
attcttcaatggattggtctttctatggatctaccgttcgttgcttcagatcatttcaaccaatt |
298 |
Q |
| |
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||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
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| T |
5717066 |
attcttcaatgaattggtctttctttggttctaccgttcgttgcttcagatcatttcaaccaatt |
5717130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 123 - 298
Target Start/End: Complemental strand, 9583809 - 9583634
Alignment:
| Q |
123 |
cgtggagcaataaatcacgattcttgtttgtgtgttagtggatgtggctctctagaaaatgtcaatcacttattttttcactgctcattttttggttcgg |
222 |
Q |
| |
|
||||| || |||||||| || ||||| |||||||||| | | |||| |||| | |||| |||||||||||||||| |||| || || | ||||| |||| |
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| T |
9583809 |
cgtggtgccataaatcatgactcttgcttgtgtgttactaggtgtgactctttggaaattgtcaatcacttatttcttcattggtcgtcttttgtgtcgg |
9583710 |
T |
|
| Q |
223 |
tttggaactatattcttcaatggattggtctttctatggatctaccgttcgttgcttcagatcatttcaaccaatt |
298 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||| |
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| T |
9583709 |
tttggaactacattcttcaatggattggtctttctatggttctaccgttcgttgcttgagatcatttcaaacaatt |
9583634 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 123 - 259
Target Start/End: Original strand, 42457401 - 42457537
Alignment:
| Q |
123 |
cgtggagcaataaatcacgattcttgtttgtgtgttagtggatgtggctctctagaaaatgtcaatcacttattttttcactgctcattttttggttcgg |
222 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||| ||| ||||| ||| | ||| |||| | || ||||||||||| ||||| |||||||| |||| |
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| T |
42457401 |
cgtggtgcaataaattacgattcttgtttgtgtgttgctgggtgtggttctttggaagttgtcgaccatttattttttcattgctcgttttttgggtcgg |
42457500 |
T |
|
| Q |
223 |
tttggaactatattcttcaatggattggtctttctat |
259 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||| |
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| T |
42457501 |
tttggaacaacattcttcaatggattggtctttctat |
42457537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 217
Target Start/End: Original strand, 6612101 - 6612165
Alignment:
| Q |
153 |
tgtgttagtggatgtggctctctagaaaatgtcaatcacttattttttcactgctcattttttgg |
217 |
Q |
| |
|
||||||| |||||||||||||| |||| ||||||||| |||||||| || || || |||||||| |
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| T |
6612101 |
tgtgttactggatgtggctctccggaaactgtcaatcatttatttttacattgatcgttttttgg |
6612165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 258
Target Start/End: Original strand, 7582881 - 7582970
Alignment:
| Q |
169 |
gctctctagaaaatgtcaatcacttattttttcactgctcattttttggttcggtttggaactatattcttcaatggattggtctttcta |
258 |
Q |
| |
|
|||||||||||| |||||| | |||||||| || ||||| |||||||| ||||||||||| |||||| | ||||||| | ||||||| |
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|
| T |
7582881 |
gctctctagaaaccgtcaattatttatttttacattgctcgttttttgggtcggtttggaatcttattctccgatggattcgcctttcta |
7582970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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