View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13190_low_15 (Length: 254)
Name: NF13190_low_15
Description: NF13190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13190_low_15 |
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| [»] scaffold0374 (1 HSPs) |
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| [»] scaffold0258 (1 HSPs) |
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| [»] scaffold0117 (1 HSPs) |
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| [»] scaffold0328 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 8 - 238
Target Start/End: Complemental strand, 9683312 - 9683082
Alignment:
| Q |
8 |
caaactagtgagtaagtggaggtctcaaatagagaaatcaaaagcattttggagaaaaccgtttctatgtcaagaaaagattgggatatgaagcttgacg |
107 |
Q |
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| T |
9683312 |
caaactagtgggtaagtggaggtctcaaatagagaaatcaaaagcattttggagaaaaccgtttctatgtcaagaaaagattgggatatgaagcttgacg |
9683213 |
T |
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| Q |
108 |
atgcattttgggtttaccggacagttagaactttacaaaactcatattggtatgactccttacaaattaatttatgagaagtattgtcatcttccacttg |
207 |
Q |
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| T |
9683212 |
atgcactttgggtttaccggacagttagaactttacaaaactcctattggtatgactccttacaaattaatttatgagaagtattgtcatcttccacttg |
9683113 |
T |
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| Q |
208 |
agcttgagcacaagacatattgggcaataaa |
238 |
Q |
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| T |
9683112 |
agcttgagcacaagacatattgggcaataaa |
9683082 |
T |
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Target: scaffold0374 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0374
Description:
Target: scaffold0374; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 140 - 235
Target Start/End: Original strand, 8478 - 8573
Alignment:
| Q |
140 |
ttacaaaactcatattggtatgactccttacaaattaatttatgagaagtattgtcatcttccacttgagcttgagcacaagacatattgggcaat |
235 |
Q |
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| T |
8478 |
ttacaaaactcccattggtatgaccccttttaaactaatctatgggaaatcttgtcatcttccggttgagcttgagcacaaggcctattgggcaat |
8573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0258 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0258
Description:
Target: scaffold0258; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 235
Target Start/End: Complemental strand, 24069 - 23974
Alignment:
| Q |
140 |
ttacaaaactcatattggtatgactccttacaaattaatttatgagaagtattgtcatcttccacttgagcttgagcacaagacatattgggcaat |
235 |
Q |
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| T |
24069 |
ttacaaaactcccattggaatgactccttttaaactaatctatgagaaatcttgtcaccttccggttgagctcgagcacaaggcttattgggcaat |
23974 |
T |
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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 235
Target Start/End: Complemental strand, 17486839 - 17486744
Alignment:
| Q |
140 |
ttacaaaactcatattggtatgactccttacaaattaatttatgagaagtattgtcatcttccacttgagcttgagcacaagacatattgggcaat |
235 |
Q |
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||||||||||| ||||| |||||||||| ||| |||| |||| ||| | |||||| ||||| ||||||||||||||||| | ||||||||||| |
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| T |
17486839 |
ttacaaaactcccattggaatgactccttttaaactaatctatgggaaatcttgtcaccttccggttgagcttgagcacaaggcttattgggcaat |
17486744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 235
Target Start/End: Original strand, 13063317 - 13063412
Alignment:
| Q |
140 |
ttacaaaactcatattggtatgactccttacaaattaatttatgagaagtattgtcatcttccacttgagcttgagcacaagacatattgggcaat |
235 |
Q |
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||||||||||| ||||| ||||| |||| ||| |||| |||| ||||| |||||| ||||| ||||||||||||||||| | ||||||||||| |
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| T |
13063317 |
ttacaaaactcccattggaatgacaccttttaaactaatctatgggaagtcttgtcaccttccggttgagcttgagcacaaggcctattgggcaat |
13063412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 235
Target Start/End: Original strand, 23629663 - 23629758
Alignment:
| Q |
140 |
ttacaaaactcatattggtatgactccttacaaattaatttatgagaagtattgtcatcttccacttgagcttgagcacaagacatattgggcaat |
235 |
Q |
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||||||||||| ||||| ||||| |||| ||| |||| |||||||| | |||||| ||||| ||||||||||||||||| | ||||||||||| |
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| T |
23629663 |
ttacaaaactcccattggaatgaccccttttaaactaatctatgagaaatcttgtcaccttccggttgagcttgagcacaaggcctattgggcaat |
23629758 |
T |
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Target: scaffold0117 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0117
Description:
Target: scaffold0117; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 140 - 235
Target Start/End: Complemental strand, 47141 - 47046
Alignment:
| Q |
140 |
ttacaaaactcatattggtatgactccttacaaattaatttatgagaagtattgtcatcttccacttgagcttgagcacaagacatattgggcaat |
235 |
Q |
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||||||||||| ||||| ||||| |||| ||| ||||||||| ||| | |||||| ||||| ||||||||||| ||||| | ||||||||||| |
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| T |
47141 |
ttacaaaactcccattggaatgaccccttttaaactaatttatgggaaatcttgtcaccttccggttgagcttgagtacaaggcctattgggcaat |
47046 |
T |
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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 140 - 231
Target Start/End: Complemental strand, 25647419 - 25647328
Alignment:
| Q |
140 |
ttacaaaactcatattggtatgactccttacaaattaatttatgagaagtattgtcatcttccacttgagcttgagcacaagacatattggg |
231 |
Q |
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||||||||||| ||||| |||||||||| ||| |||| |||| ||| | |||||||||| | ||||||||||||||||| | ||||||| |
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| T |
25647419 |
ttacaaaactcccattggaatgactccttttaaactaatctatgggaaatcttgtcatctttcggttgagcttgagcacaaggcttattggg |
25647328 |
T |
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Target: scaffold0328 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0328
Description:
Target: scaffold0328; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 231
Target Start/End: Complemental strand, 2185 - 2107
Alignment:
| Q |
153 |
attggtatgactccttacaaattaatttatgagaagtattgtcatcttccacttgagcttgagcacaagacatattggg |
231 |
Q |
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| T |
2185 |
attggaatgactccttttaaactaatttatgggaaatcttgtcaccttccggttgagcttgagcacaaggcttattggg |
2107 |
T |
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