View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13190_low_16 (Length: 250)
Name: NF13190_low_16
Description: NF13190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13190_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 27877428 - 27877196
Alignment:
| Q |
1 |
caattgtttttatgtatatgtgtttaaacattgagtttggt-aactttaaaatttgagcaataagagagaggttacacaataaaata---tgaaaataat |
96 |
Q |
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| T |
27877428 |
caattgtttttatgtat--gtttttaaacattgagtttggttaactttaaaatttgagcaataagcgagaggttacataataaaatactatgaaaataat |
27877331 |
T |
|
| Q |
97 |
gaatgtagtaaataatatatttgctatttatggtcatcactcaacaactacaccattggtataactttaaattttatacattatgcctatataatttgta |
196 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
27877330 |
gaatgtagtaaataatatatttgctatttatggtca---ctcaacaactacacaattggtataactttaaattttatacattatgtctatataatttgta |
27877234 |
T |
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| Q |
197 |
cactacatcgacatatagacaaatatattgacaagaat |
234 |
Q |
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||| |||||| |||||||||||||||||| |||||||| |
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| T |
27877233 |
cacaacatcgtcatatagacaaatatatttacaagaat |
27877196 |
T |
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