View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13190_low_5 (Length: 672)
Name: NF13190_low_5
Description: NF13190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13190_low_5 |
 | |
|
| [»] scaffold0022 (2 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 17 - 391
Target Start/End: Complemental strand, 23924845 - 23924456
Alignment:
| Q |
17 |
acgtgtcattgtgatgttataagagaaaattttgaaatattagtgtttcatttatgattgtaattttagttaaattactactaaggtacaatattaaaga |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
23924845 |
acgtgtcattgtgatgttataagagaaaattgtgaaatattagtgtttcatttatgattgtaatttaagttaaattactactaaggtacaatattaaaga |
23924746 |
T |
|
| Q |
117 |
agggtatatcttagtttgttccatgttggttgttgcttggagg---------------cttttactatttgagaagaatgattttgatttatttgtactc |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23924745 |
agggtatatcttagtttgttccatgttggttgttgcttggaggagttatctagttttgcttttactatttgagaagaatgattttgatttatttgtactc |
23924646 |
T |
|
| Q |
202 |
tatgagtagctactttggcagccaagcacttcatggacatcaacatgtatgtcctagtactattctagctatttcatgctttttactcctttcttgagtt |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23924645 |
tatgagtagctactttggcagccaagcacttcatggacatcaacatgtatgtcctagtactattctagctatttcatgctttttactcctttcttgagtt |
23924546 |
T |
|
| Q |
302 |
ctagaattctaagatattcattgctattgagtcaaaataaaatgctactaaaaggccagaattgtagacttatacgtatgactaattgtt |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23924545 |
ttagaattctaagatattcattgctattgagtcaaaataaaatgctactaaaaggccagaattgtagacttatacgtatgactaattgtt |
23924456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 441 - 670
Target Start/End: Complemental strand, 23924437 - 23924208
Alignment:
| Q |
441 |
aaactaaacacaaaatatatagttgtgtctttgaagcatattgaggatccaatccaggagcatgcaaaaggggttgatcagagtattggtgaggtaagtt |
540 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23924437 |
aaactaaacacaaaatatatagttgtgtctttgaagcatattgaggatccagtccaggagcatgcaaaaggggttgatcagagtattggtgaggtaagtt |
23924338 |
T |
|
| Q |
541 |
gttcatctctatctttagccttttcagctgaagtagaaaagctagaagcagacttgtagtgctatacctgtttaaatagtttgacttgcttgtaaactct |
640 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23924337 |
gttcatctctatttttagccttttcagctgaagtagaaaagctagaagaagacttgtagtgttatacctgtttaaatagtttgacttgcttgtaaactct |
23924238 |
T |
|
| Q |
641 |
attttgattgttttgttagcaatattcttc |
670 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
23924237 |
attttgattgttttgttagcaatattcttc |
23924208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 184; Significance: 3e-99; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 475 - 670
Target Start/End: Original strand, 10642224 - 10642419
Alignment:
| Q |
475 |
agcatattgaggatccaatccaggagcatgcaaaaggggttgatcagagtattggtgaggtaagttgttcatctctatctttagccttttcagctgaagt |
574 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
10642224 |
agcatattgaggatccagtccaggagcatgcaaaaggggttgatcagagtatcggtgaggtaagttgttcatctctatttttagccttttcagctgaagt |
10642323 |
T |
|
| Q |
575 |
agaaaagctagaagcagacttgtagtgctatacctgtttaaatagtttgacttgcttgtaaactctattttgattgttttgttagcaatattcttc |
670 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10642324 |
agaaaagctagaagcagacttgtagtgctatacctgtttaaatagtttgacttgcttgtaaactctattttgattgttttgttagcaatattcttc |
10642419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 520 - 670
Target Start/End: Complemental strand, 32713560 - 32713410
Alignment:
| Q |
520 |
agagtattggtgaggtaagttgttcatctctatctttagccttttcagctgaagtagaaaagctagaagcagacttgtagtgctatacctgtttaaatag |
619 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32713560 |
agagtattggtgaggtaagttgttcatctctatttttagccttttcagctgaagtagaaaagctagaagcagacttgtagtgctatacctgtttaaatag |
32713461 |
T |
|
| Q |
620 |
tttgacttgcttgtaaactctattttgattgttttgttagcaatattcttc |
670 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32713460 |
tttgacttgcttgtaaactctattttgattgttttgttagcaatattcttc |
32713410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 520 - 559
Target Start/End: Original strand, 10642187 - 10642226
Alignment:
| Q |
520 |
agagtattggtgaggtaagttgttcatctctatctttagc |
559 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
10642187 |
agagtattggtgaggtaagttgttcatctctatttttagc |
10642226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 172; Significance: 4e-92; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 17 - 227
Target Start/End: Complemental strand, 11845817 - 11845592
Alignment:
| Q |
17 |
acgtgtcattgtgatgttataagagaaaattttgaaatattagtgtttcatttatgattgtaattttagttaaattactactaaggtacaatattaaaga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11845817 |
acgtgtcattgtgatgttataagagaaaattttgaaatattagtgtttcatttatgattgtaattttagttaaattactactaaggtacaatattaaaga |
11845718 |
T |
|
| Q |
117 |
agggtatatcttagtttgttccatgttggttgttgcttggag---------------gcttttactatttgagaagaatgattttgatttatttgtactc |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11845717 |
agggtatatcttagtttgttccatgttggttgttgcttggaggagttatctagttttgcttttactatttgagaagaatgattttgatttatttgtactc |
11845618 |
T |
|
| Q |
202 |
tatgagtagctactttggcagccaag |
227 |
Q |
| |
|
| |||||||||||||||||||||||| |
|
|
| T |
11845617 |
tgtgagtagctactttggcagccaag |
11845592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 257 - 399
Target Start/End: Complemental strand, 11845593 - 11845451
Alignment:
| Q |
257 |
agtactattctagctatttcatgctttttactcctttcttgagttctagaattctaagatattcattgctattgagtcaaaataaaatgctactaaaagg |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11845593 |
agtactattctagctatttcatgctttttactcctttcttgagttctagaattctaagatattcattgctattgagtcaaaataaaatgctactaaaagg |
11845494 |
T |
|
| Q |
357 |
ccagaattgtagacttatacgtatgactaattgttgttataaa |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11845493 |
ccagaattgtagacttatacgtatgactaattgttgttataaa |
11845451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 561 - 657
Target Start/End: Original strand, 88991 - 89087
Alignment:
| Q |
561 |
ttttcagctgaagtagaaaagctagaagcagacttgtagtgctatacctgtttaaatagtttgacttgcttgtaaactctattttgattgttttgtt |
657 |
Q |
| |
|
||||||| |||| ||||||||||||||| ||||| ||||||||||| |||||| || ||||||||| || |||||| | |||||||||||||||| |
|
|
| T |
88991 |
ttttcaggtgaaatagaaaagctagaagtagactcgtagtgctataactgttttaacagtttgactgtgttctaaactgtgttttgattgttttgtt |
89087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 447 - 528
Target Start/End: Original strand, 88860 - 88941
Alignment:
| Q |
447 |
aacacaaaatatatagttgtgtctttgaagcatattgaggatccaatccaggagcatgcaaaaggggttgatcagagtattg |
528 |
Q |
| |
|
|||||| || |||||| |||||||||| | ||| |||||||||| | ||||||||||||||||||||||| ||||||||| |
|
|
| T |
88860 |
aacacagaagatatagctgtgtctttggatcatgttgaggatcccactgaggagcatgcaaaaggggttgataagagtattg |
88941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 216 - 329
Target Start/End: Original strand, 38325031 - 38325145
Alignment:
| Q |
216 |
ttggcagccaagcac-ttcatggacatcaacatgtatgtcctagtactattctagctatttcatgctttttactcctttcttgagttctagaattctaag |
314 |
Q |
| |
|
||||||||||||||| || |||||||||||| |||| || || ||| |||||||| ||||| ||||||| |||||||| ||||| ||||||| |||| |
|
|
| T |
38325031 |
ttggcagccaagcacttttatggacatcaacctgtaagtattattacctatctagctacttcatcctttttattcctttctcgagttttagaattttaag |
38325130 |
T |
|
| Q |
315 |
atattcattgctatt |
329 |
Q |
| |
|
||| ||||| ||||| |
|
|
| T |
38325131 |
ataatcattactatt |
38325145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 6100710 - 6100759
Alignment:
| Q |
160 |
cttttactatttgagaagaatgattttgatttatttgtactctatgagtag |
210 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||| |||||| ||||||||||| |
|
|
| T |
6100710 |
cttttaatatttgagaagaatgtttttgattt-tttgtattctatgagtag |
6100759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University