View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13190_low_8 (Length: 534)
Name: NF13190_low_8
Description: NF13190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13190_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 19 - 518
Target Start/End: Complemental strand, 9467306 - 9466815
Alignment:
| Q |
19 |
gtacagaacaaattaat-gtggtttaaataccaacccatgttgcaatttacccattcttaactcaacacacttggatgggacgataaggcctaaggtttt |
117 |
Q |
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| T |
9467306 |
gtacagaacaaactaattgtggtttaaataccaacccatgttgcaatttacccattcttaactcaacacacttggatgggacgataaggcctaaggtttt |
9467207 |
T |
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| Q |
118 |
ccggtttaactaaatgttttggatttaaattcaatcttaaaaataaatacaatagtgtttacgttttttgagagagttttgctgcatattatagttttat |
217 |
Q |
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| T |
9467206 |
ccggtttaactaaatgttttggatttaaattcaatcttaaaaataaataca------------ttttttgagagagttttgctgcatattatagttttat |
9467119 |
T |
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| Q |
218 |
gtggttcaatgaatata----gttatgcgtaaagatatctgatacacatcaatatatattttttcccattctgatcatcatccagaattaaaatttctgg |
313 |
Q |
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| T |
9467118 |
gtggttcaatgaatatatacagttatgcataaagatatctgatacacatcaatatatattttttcccattctgatcatcatccagaattaaaatttctgg |
9467019 |
T |
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| Q |
314 |
cctttatggtgttaaaaacaaaatctgaccataataattagttaagaagttaatgatttccttnnnnnnnnnnnnnngtaaatgatttga---nnnnnnn |
410 |
Q |
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| T |
9467018 |
cctttatggtgttaaaaacaaaatctgaccataataattagttaagaagttaatgatttcctt----aaaaaaaaaagtaaatgatttgatttttttttt |
9466923 |
T |
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| Q |
411 |
ngatgcaaaatgattcatgataaataaattactattttaaaaaagaatagttatgatattttttgcaaatcattaatatatatgaatgaataaagcaata |
510 |
Q |
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| T |
9466922 |
ttatgcaaaatgattcatgataaataaattactattttaaaaaagaatagttatgatattttttgcaaatcattaatatatatgaatgaataaagcaata |
9466823 |
T |
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