View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13191_high_2 (Length: 347)
Name: NF13191_high_2
Description: NF13191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13191_high_2 |
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| [»] chr2 (2 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 15 - 347
Target Start/End: Complemental strand, 4982905 - 4982573
Alignment:
| Q |
15 |
aaatcatcaaatgcattatgaacatctgagatatcgccgtgtgtaggcgataaatgtggtccttcaatctgtttatacccttttctaaaccaactatttt |
114 |
Q |
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| T |
4982905 |
aaatcatcaaatgcattatgaacatctgagatatcgccgtgtgtaggcgataaatgtggtccttcaatctgtttatacccttttctaaaccaactatttt |
4982806 |
T |
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| Q |
115 |
gcataatcttgttaatagtaattcttgtttttggatcaggatcaaggattctataaagaagccttttcacatcagaatgaaaccattgtggaaacttgaa |
214 |
Q |
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| T |
4982805 |
gcataatcttgttaatagtaattcttgtttttggatcaggatcaaggattctataaagaagccttttcacatcagaatgaaaccattgtggaaacttgaa |
4982706 |
T |
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| Q |
215 |
atcagcagttgcaatcttcttatacatctccattaaatttctatcattgaaaggaagaaaccctgccaatagaacaaagagaataacaccacaagaccaa |
314 |
Q |
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| T |
4982705 |
atcagcagttgcaatcttcttatacatctccattaaatttctatcattgaaaggaagaaaacctgccaatagaacaaagagaataacaccacaagaccaa |
4982606 |
T |
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| Q |
315 |
atatctgccttggctccatcataacctttcttc |
347 |
Q |
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| T |
4982605 |
atatctgccttggctccatcataacctttcttc |
4982573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 289 - 340
Target Start/End: Original strand, 45268263 - 45268314
Alignment:
| Q |
289 |
caaagagaataacaccacaagaccaaatatctgccttggctccatcataacc |
340 |
Q |
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| T |
45268263 |
caaaaagaataacaccacaagaccaaatatcagcttttgatccatcataacc |
45268314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 347
Target Start/End: Original strand, 31903873 - 31903992
Alignment:
| Q |
228 |
atcttcttatacatctccattaaatttctatcattgaaaggaagaaaccctgccaatagaacaaagagaataacaccacaagaccaaatatctgccttgg |
327 |
Q |
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|||||| |||||||| |||| |||||| |||||| || |||||| | || |||| |||||||| || |||| |||||| ||||||||||| |||| | |
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| T |
31903873 |
atcttcctatacatcaccatcaaatttggatcattaaatggaagataaccagccacaagaacaaacagtataataccacatgaccaaatatccaccttag |
31903972 |
T |
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| Q |
328 |
ctccatcataacctttcttc |
347 |
Q |
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| T |
31903973 |
ctccatcataacctctcttc |
31903992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 340
Target Start/End: Complemental strand, 31892849 - 31892737
Alignment:
| Q |
228 |
atcttcttatacatctccattaaatttctatcattgaaaggaagaaaccctgccaatagaacaaagagaataacaccacaagaccaaatatctgccttgg |
327 |
Q |
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|||||| ||||||||||||| ||||| ||||||||||| | | | || || | || |||||| |||| ||| ||||||||||||||||| || |||| |
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| T |
31892849 |
atcttcctatacatctccatcaaattggagtcattgaaaggtacataaccagcaagtaaaacaaaaagaacaactccacaagaccaaatatcagctttgg |
31892750 |
T |
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| Q |
328 |
ctccatcataacc |
340 |
Q |
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| T |
31892749 |
aaccatcataacc |
31892737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 228 - 343
Target Start/End: Complemental strand, 27279044 - 27278929
Alignment:
| Q |
228 |
atcttcttatacatctccattaaatttctatcattgaaaggaagaaaccctgccaatagaacaaagagaataacaccacaagaccaaatatctgccttgg |
327 |
Q |
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|||||| |||||||||| || |||||| |||| ||||||||| | |||||||||| |||||| |||| | ||||||||||||||||| || |||| |
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| T |
27279044 |
atcttcctatacatctctatcaaatttgagtcatgaaaaggaagataacctgccaataaaacaaacagaactattccacaagaccaaatatcggctttgg |
27278945 |
T |
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| Q |
328 |
ctccatcataaccttt |
343 |
Q |
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| T |
27278944 |
caccgtcatacccttt |
27278929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 347
Target Start/End: Complemental strand, 54659765 - 54659712
Alignment:
| Q |
294 |
agaataacaccacaagaccaaatatctgccttggctccatcataacctttcttc |
347 |
Q |
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|||||||||||||||||||||||||| ||||| || || || ||||| |||||| |
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| T |
54659765 |
agaataacaccacaagaccaaatatcagccttagcaccgtcgtaacccttcttc |
54659712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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