View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13191_low_3 (Length: 295)
Name: NF13191_low_3
Description: NF13191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13191_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 59 - 276
Target Start/End: Original strand, 38559265 - 38559482
Alignment:
| Q |
59 |
ctcattttacttcaccactccaattcaaaattaatgaataccctttcacggatttggttttgattcaaagagaaaatgtaatccatggtttgtaatggca |
158 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38559265 |
ctcattttacttcaccactccaattcaaaattaatgaataccctttcttggatttggttttgattcaaagagaaaatgtaatccatggtttgtaatggca |
38559364 |
T |
|
| Q |
159 |
gtaaaaggaattgaattgattccataactcagtaacccttctgtatacaatatattaaggatacaaaaattgttggaagggtgagtatgaatcaaattaa |
258 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38559365 |
gtaaaaggaattgagttgattccataactcggtaacccttctatatacaatatattaaggatacaaaaattgttggaagggtgagtatgaatcaaattaa |
38559464 |
T |
|
| Q |
259 |
tttgataaatgtgaaatt |
276 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
38559465 |
tttgataaatgtgaaatt |
38559482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 178; Significance: 5e-96; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 59 - 276
Target Start/End: Original strand, 53343395 - 53343612
Alignment:
| Q |
59 |
ctcattttacttcaccactccaattcaaaattaatgaataccctttcacggatttggttttgattcaaagagaaaatgtaatccatggtttgtaatggca |
158 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||| || |||| |
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| T |
53343395 |
ctcattttacttcaccactccaattcaaaatttatgaatacgctttctcggatttggttttgattcaaagagaaaacgtaatccatggtttgcaacggca |
53343494 |
T |
|
| Q |
159 |
gtaaaaggaattgaattgattccataactcagtaacccttctgtatacaatatattaaggatacaaaaattgttggaagggtgagtatgaatcaaattaa |
258 |
Q |
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||||||| |||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53343495 |
gtaaaagaaattgagttgattccataactcagtaacccttatgcatacaatatattaaggatacaaaaattgttggaagggtgagtatgaatcaaattaa |
53343594 |
T |
|
| Q |
259 |
tttgataaatgtgaaatt |
276 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
53343595 |
tttgataaatgtgaaatt |
53343612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 59 - 276
Target Start/End: Complemental strand, 52716092 - 52715890
Alignment:
| Q |
59 |
ctcattttacttcaccactccaattcaaaattaatgaataccctttcacggatttggttttgattcaaagagaaaatgtaatccatggtttgtaatggca |
158 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
52716092 |
ctcattttacttcaccactccaattcaaaatttatgaataccctttctcagatttggttttgattcaaagagaaaacgtaatccatggtttgtaatggca |
52715993 |
T |
|
| Q |
159 |
gtaaaaggaattgaattgattccataactcagtaacccttctgtatacaatatattaaggatacaaaaattgttggaagggtgagtatgaatcaaattaa |
258 |
Q |
| |
|
|||||||||||||| || |||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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|
| T |
52715992 |
gtaaaaggaattgagtt-----------tcagtaacccttctgt----aatatattaaggatacaaaaattgatggaaggatgagtatgaatcaaattaa |
52715908 |
T |
|
| Q |
259 |
tttgataaatgtgaaatt |
276 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
52715907 |
tttgataaatgtgaaatt |
52715890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 63 - 210
Target Start/End: Original strand, 32558396 - 32558544
Alignment:
| Q |
63 |
ttttacttcaccactccaattcaaaattaatgaataccctttcacggatttggttttgattcaaagagaaaatgtaatccatggtttgtaatggcagtaa |
162 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||| |||||||| ||||||||||||||||| |||||||||| ||| ||| ||||| |||| || ||| |
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|
| T |
32558396 |
ttttacttcacccctccaattcaaaatctatgaacaccctttctcggatttggttttgattgaaagagaaaactcaattcatagtttgaaatgacaataa |
32558495 |
T |
|
| Q |
163 |
aaggaattgaattgattccataactca-gtaacccttctgtatacaata |
210 |
Q |
| |
|
|||||||| ||||| | |||| ||| |||||||||||| |||||||| |
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|
| T |
32558496 |
aaggaattaggttgatgcaataagtcacgtaacccttctgaatacaata |
32558544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 63 - 210
Target Start/End: Complemental strand, 52717584 - 52717436
Alignment:
| Q |
63 |
ttttacttcaccactccaattcaaaattaatgaataccctttcacggatttggttttgattcaaagagaaaatgtaatccatggtttgtaatggcagtaa |
162 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||| |||||||| || |||||||||||||| |||||||||| ||| ||| ||||| ||||||| ||| |
|
|
| T |
52717584 |
ttttacttcacctctccaattcaaaatctatgaacaccctttctcgaatttggttttgattgaaagagaaaactcaattcatagtttgaaatggcaataa |
52717485 |
T |
|
| Q |
163 |
aaggaattgaattgattccataactca-gtaacccttctgtatacaata |
210 |
Q |
| |
|
|||||||| ||||| ||||| ||| ||||||||||| |||||||| |
|
|
| T |
52717484 |
aaggaattaggttgatgtcataaatcacttaacccttctgaatacaata |
52717436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 63 - 210
Target Start/End: Original strand, 7050574 - 7050720
Alignment:
| Q |
63 |
ttttacttcaccactccaattcaaaattaatgaataccctttcacggatttggttttgattcaaagagaaaatgtaatccatggtttgtaatggcagtaa |
162 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||| || |||| |||||||||||||||| |||||||||| ||| ||| |||| ||||||| ||| |
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|
| T |
7050574 |
ttttacttcacccctccaattcaaaatctatgaacac--tttctcggatttggttttgatcgaaagagaaaactcaattcatagtttaaaatggcaataa |
7050671 |
T |
|
| Q |
163 |
aaggaattgaattgattccataactca-gtaacccttctgtatacaata |
210 |
Q |
| |
|
|||||||| ||||| |||||| ||| |||||||||||| |||||||| |
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|
| T |
7050672 |
aaggaattaggttgatgccataagtcacgtaacccttctgaatacaata |
7050720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 144; Significance: 9e-76; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 59 - 276
Target Start/End: Complemental strand, 40600390 - 40600184
Alignment:
| Q |
59 |
ctcattttacttcaccactccaattcaaaattaatgaataccctttcacggatttggttttgattcaaagagaaaatgtaatccatggtttgtaatggca |
158 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||| | |
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|
| T |
40600390 |
ctcattttacttcaccactccaattcaaaatttataaataccctttctcggatttggttttgattcaacgagaaaacgtaatccatggtttgtaatggta |
40600291 |
T |
|
| Q |
159 |
gtaaaaggaattgaattgattccataactcagtaacccttctgtatacaatatattaaggatacaaaaattgttggaagggtgagtatgaatcaaattaa |
258 |
Q |
| |
|
|||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
40600290 |
gtaaaaggaattgagtt-----------tcaataacccttctgtatacaatatattaaggatacaaaaattgatggaagggtgagtatgaatcaaattaa |
40600202 |
T |
|
| Q |
259 |
tttgataaatgtgaaatt |
276 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
40600201 |
tttgataaatgtgaaatt |
40600184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 63 - 210
Target Start/End: Complemental strand, 8641772 - 8641624
Alignment:
| Q |
63 |
ttttacttcaccactccaattcaaaattaatgaataccctttcacggatttggttttgattcaaagagaaaatgtaatccatggtttgtaatggcagtaa |
162 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||| |||||||| || |||||||||||||| |||||||||| ||| ||| ||||| ||||||| ||| |
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|
| T |
8641772 |
ttttacttcacccctccaattcaaaatctatgaacaccctttctcgaatttggttttgattgaaagagaaaactcaattcatagtttgaaatggcaataa |
8641673 |
T |
|
| Q |
163 |
aaggaattgaattgattccataactca-gtaacccttctgtatacaata |
210 |
Q |
| |
|
|||||||| |||||| ||||| ||| |||||||||||| |||||||| |
|
|
| T |
8641672 |
aaggaattagattgatgtcataagtcacgtaacccttctgaatacaata |
8641624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 170
Target Start/End: Complemental strand, 45500450 - 45500343
Alignment:
| Q |
64 |
tttacttcaccactccaattcaaaattaatgaataccctttcacggatttggttttgattcaaagagaaaatgt-aatccatggtttgtaatggcagtaa |
162 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||| ||| |||| | |||||||||||||||||| |||||| | ||||||| || || ||||||| || |
|
|
| T |
45500450 |
tttacttcaccactccaattcataatctatgaacaccttttctcatatttggttttgattcaaaaagaaaaactcaatccatagtatgaaatggcaatag |
45500351 |
T |
|
| Q |
163 |
aaggaatt |
170 |
Q |
| |
|
|||||||| |
|
|
| T |
45500350 |
aaggaatt |
45500343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 157
Target Start/End: Complemental strand, 51198957 - 51198892
Alignment:
| Q |
92 |
atgaataccctttcacggatttggttttgattcaaagagaaaatgtaatccatggtttgtaatggc |
157 |
Q |
| |
|
||||| |||||||| | ||||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
51198957 |
atgaacaccctttctcaaatttggttttgattcaaagagaaaatgagatctgtggtttgtaatggc |
51198892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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