View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13192_high_3 (Length: 266)
Name: NF13192_high_3
Description: NF13192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13192_high_3 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 13 - 266
Target Start/End: Original strand, 17392916 - 17393169
Alignment:
| Q |
13 |
aatataggcttattcaagtcaatggtcttccaatactttcatctttgcattgttttgttaactcaattttcgtgatgagccatgctaccttgtctgttaa |
112 |
Q |
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| T |
17392916 |
aatataggcttattcaagtcaatggttttccaatactttcatctttgcattgttttgttaactcaattttcgtgatgagccatgctaccttgtctgttaa |
17393015 |
T |
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| Q |
113 |
attggatctacgcctttgtattgagcataatttcccaagcatcctttgctgttatagcatggatctttttctatctgnnnnnnnaccaacctttgatttt |
212 |
Q |
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| T |
17393016 |
attggatctacgcctttgtattgagcataatttcccatgcatcctttgctgttatagcatggatctttttctatctgtttttttaccaacctttgatttt |
17393115 |
T |
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| Q |
213 |
cttctccttataaccaagcaaaatagtgaactcaaacaaaatttactttcacat |
266 |
Q |
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| T |
17393116 |
cttctccttataaccaagcaaaatagtgaactcaaacaaaatttaatttcacat |
17393169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 102 - 174
Target Start/End: Original strand, 17389698 - 17389774
Alignment:
| Q |
102 |
ttgtctgttaaattggatctacgcctt----tgtattgagcataatttcccaagcatcctttgctgttatagcatgg |
174 |
Q |
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| T |
17389698 |
ttgtctcttaaattggatctacttctttgtatgtattgagcataatttaccaagcttcctttgctgttatagcatgg |
17389774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 17377806 - 17377888
Alignment:
| Q |
13 |
aatataggcttattcaagtcaatggtcttccaatactttcatctttgcattgttttgttaactc-aattttcgtgatgagcca |
94 |
Q |
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| T |
17377806 |
aatataggcttatataaatcagtagtctgccaatactttcttctttgcattgttttgttagctcaaattttcgcgatgagcca |
17377888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 13 - 189
Target Start/End: Complemental strand, 26052638 - 26052462
Alignment:
| Q |
13 |
aatataggcttattcaagtcaatggtcttccaatactttcatctttgcattgttttgttaactcaattttcgtgatgagccatgctaccttgtctgttaa |
112 |
Q |
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|||||||| |||| | | ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26052638 |
aatataggtttatactaatcaatggtccgccaatactttcatctgtgcattgttttgttaactcaattttcgtgatgagccatgctaccttgtctgttaa |
26052539 |
T |
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| Q |
113 |
attggatctacgcctttgtattgagcataatttcccaagcatcctttgctgttatagcatggatctttttctatctg |
189 |
Q |
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| T |
26052538 |
attggatttacacttttgtattgagcataatttcccaaggatcctttgctgttatagcatggatctttttctatctg |
26052462 |
T |
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