View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13192_low_1 (Length: 428)
Name: NF13192_low_1
Description: NF13192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13192_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 11 - 408
Target Start/End: Complemental strand, 18665539 - 18665142
Alignment:
| Q |
11 |
caaagggtctaatacatcaaggaatatttccaccgctgctgaaaggtgggattatcaagctaatgattcttcggattaccatcaaaatcgtcctaggttt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
18665539 |
caaagggtctaatacatcaaggaatatttccaccgctgctgaaaggtgggattatcaagctaatgattcttcggattaccatcaaaattgtcctaggttt |
18665440 |
T |
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| Q |
111 |
catcagcaaaatgcaagtggatattttccgaataatcatgctagttcagagcgaatttattatggatctggtcaaactgcacatggagggcatgtaaata |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18665439 |
catcagcaaaatgcaagtggatattttccgaataatcatgctagttcagagcgaatttattatggatctggtcaaactgcacatggagggcatgtaaata |
18665340 |
T |
|
| Q |
211 |
ataatatcacccagaatgtagttcaaaataatttggcagagcataatggaagtgtcaatgaggactttggtcaaagaaacttcaaaatgcaacataaagt |
310 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18665339 |
ataatatcactcagaatgtagttcaaaataatttggcagagcataatggaagtgtcaatgaggactttggtcaaagaaacttcaaaatgcaacataaagt |
18665240 |
T |
|
| Q |
311 |
tggggtaggtgttgataattcaaggggctttgggatgcatccttatggttcttttgagagacataattggagactagaatccggagaaacgatgaagt |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18665239 |
tggggtaggtgttgataattcaaggggctttgggatgcatccttatggttcttttgagagacataattggagactagaatccggagaaacgatgaagt |
18665142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 11 - 408
Target Start/End: Original strand, 15078289 - 15078686
Alignment:
| Q |
11 |
caaagggtctaatacatcaaggaatatttccaccgctgctgaaaggtgggattatcaagctaatgattcttcggattaccatcaaaatcgtcctaggttt |
110 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
15078289 |
caaagggtctaatacatcaagggatatttccaccgctgctgaaaggtgggattatcaagctaatgattcttcggattaccagcaaaatcgtcctaggttt |
15078388 |
T |
|
| Q |
111 |
catcagcaaaatgcaagtggatattttccgaataatcatgctagttcagagcgaatttattatggatctggtcaaactgcacatggagggcatgtaaata |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
15078389 |
catcagcaaaatgcaagtggatattttccgaataatcatgctagttcagagcgaatttattatggatctggtcaaactgcgcatggagggcatgtaaata |
15078488 |
T |
|
| Q |
211 |
ataatatcacccagaatgtagttcaaaataatttggcagagcataatggaagtgtcaatgaggactttggtcaaagaaacttcaaaatgcaacataaagt |
310 |
Q |
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| T |
15078489 |
ataatatcacccagaatgtagttcaaaataatttggcagagcataatggaagtgtcaatgaggactttggtcaaagaaacttcaaaatgcaacataaagt |
15078588 |
T |
|
| Q |
311 |
tggggtaggtgttgataattcaaggggctttgggatgcatccttatggttcttttgagagacataattggagactagaatccggagaaacgatgaagt |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15078589 |
tggggtaggtgttgataattcaaggggctttgggatgcatccttatggttcttttgagagacataattggagactagaatccggagaaacgatgaagt |
15078686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 308
Target Start/End: Original strand, 22272633 - 22272684
Alignment:
| Q |
257 |
tggaagtgtcaatgaggactttggtcaaagaaacttcaaaatgcaacataaa |
308 |
Q |
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|||||||||||||| |||| ||||||||| ||||| ||||||||||||||| |
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| T |
22272633 |
tggaagtgtcaatgcagactctggtcaaagcaacttgaaaatgcaacataaa |
22272684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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