View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13192_low_2 (Length: 345)
Name: NF13192_low_2
Description: NF13192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13192_low_2 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 25010974 - 25011318
Alignment:
| Q |
1 |
taacgccagggggttttccctgctgatccgacaagcgccaatactcacatctttccaacgcctacaaaggagccaaattcaaatgaaatatcatctagtc |
100 |
Q |
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| T |
25010974 |
taacaccagggggttttccctgctgatccgacaagcgccaatactcacatctttccaacgcctacaaaggagccaaattcaaatgaaatgtcatctagtc |
25011073 |
T |
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| Q |
101 |
agttgcagaataaacagacttgtctagtaaaaagcaaaaatggtaacagcgtaaacttctgtctgctcatttttaagtatccttagagaggtgcggtgag |
200 |
Q |
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| T |
25011074 |
agttgcaaaataaacagacttgtctagtaaaaagcaaaaatggtaacagcgtaaacttctgtctgctcatttttaagtatccttagagaggtgcggtgag |
25011173 |
T |
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| Q |
201 |
tttcagtttaaaaacaaatttgaaattattactattaataaaggttagcactaatgatcattttacaattgtcccatataggatttgaactcatgacagt |
300 |
Q |
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| T |
25011174 |
tttcagtttaaaaacaaatttgaaattattattattaataaaggttagcactaatgatcattttacaattgttccatataggatttgaactcatgacagt |
25011273 |
T |
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| Q |
301 |
ctaatcacgatccaaccatcactaatgtgctgactgtgtgaatac |
345 |
Q |
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| T |
25011274 |
ctaatcacgatccaaccatcactaatgtgctgactgtgtgaatac |
25011318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 292
Target Start/End: Original strand, 4752802 - 4752841
Alignment:
| Q |
253 |
aatgatcattttacaattgtcccatataggatttgaactc |
292 |
Q |
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| T |
4752802 |
aatgatcattttacaactgttccatataggatttgaactc |
4752841 |
T |
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