View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13193_low_3 (Length: 484)
Name: NF13193_low_3
Description: NF13193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13193_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 19 - 477
Target Start/End: Complemental strand, 23507012 - 23506554
Alignment:
| Q |
19 |
agtgaatagttggagagagaatgtagagaagtagaagttgaaatgatggaggaaggaaattaaggaagaaggagatacaatgaaagtaattaaagataat |
118 |
Q |
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| T |
23507012 |
agtgaatagttggagagagaatgtagagaagtagaagttgaaatgatggaggaaagaaattaaggaagaaggagatacaatgaaagtaattaaagataat |
23506913 |
T |
|
| Q |
119 |
gaaactaaaaatggtgtaagcttaattagatagttttgagcttttatgctcctactcaagaatgctattctatgggaattgagttgattcatattttcaa |
218 |
Q |
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| T |
23506912 |
gaaactaaaaatggtgtaagcttaattagatagttttgagcttttatgctcctactcaagaatgatattctatgggaattgagttgattcatattttcaa |
23506813 |
T |
|
| Q |
219 |
ctttcttgtgtagagtgaaaatggatctaaagagagtttctaaatggtgattgtaaacttgtatgaggtgggactaaagaggcttccttatatacaatgt |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23506812 |
ctttcttgtgtagagtgaaaatggatctaaagagagtttataaatggtgattgtcaacttgtatgaggtgggactaaagaggcttccttatatacaatgt |
23506713 |
T |
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| Q |
319 |
aggggactttagatttgggatactcatgtagagtttgtttttcattgccaaaaatgcccttgctttgcaaattattatgaagtagatggcatatatttga |
418 |
Q |
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||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23506712 |
aggagactttagatttgggatactcatgtatagtttgtttttcattgccaaaaatgcccttgctttgcaaattattatgaagtagatggcatatatttga |
23506613 |
T |
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| Q |
419 |
ttttatcccaacttacaaagattacctactattcagggcttttgttataaatgatgatg |
477 |
Q |
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| T |
23506612 |
ttttatcccaacttacaaagattacctactattcagggcttttgttataaatgatgatg |
23506554 |
T |
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