View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13193_low_4 (Length: 402)

Name: NF13193_low_4
Description: NF13193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13193_low_4
NF13193_low_4
[»] chr5 (2 HSPs)
chr5 (10-243)||(18684468-18684706)
chr5 (315-348)||(38766815-38766848)
[»] chr8 (2 HSPs)
chr8 (290-359)||(4055578-4055647)
chr8 (315-359)||(39551171-39551215)
[»] chr6 (2 HSPs)
chr6 (206-257)||(32578031-32578083)
chr6 (290-380)||(34939783-34939873)
[»] chr2 (3 HSPs)
chr2 (290-352)||(41041991-41042053)
chr2 (315-351)||(39539713-39539749)
chr2 (290-350)||(40145491-40145551)
[»] chr7 (1 HSPs)
chr7 (290-339)||(2767160-2767209)
[»] chr1 (1 HSPs)
chr1 (321-369)||(5157142-5157190)


Alignment Details
Target: chr5 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 10 - 243
Target Start/End: Original strand, 18684468 - 18684706
Alignment:
Q  10 catcatcaaatgaatttaaatttaattaaaatttaggatgaaatttaggttaagctgcttaggtcaatcaaattgatcatgttttcactaaaaataggtt 109  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  18684468 catcatcaaattaatttaaatttaattaaaatttaggatgaaatttaggttaagttgcttaggtcaatcaaattgatcatgttttcactaaaaataggtt 18684567  T
Q  110 aaaacagccaccaactatttgcaactattttcagggga-----nnnnnnnnnnaatattttgcatttttagtgagaaagccctgttaggataaacattag 204  Q
    ||||||||||||||||||||||||||||||||||||||               |||||||||||||||||||||||||||||||||||||||||||||||    
T  18684568 aaaacagccaccaactatttgcaactattttcaggggatttttttttttttttaatattttgcatttttagtgagaaagccctgttaggataaacattag 18684667  T
Q  205 ggcttatgtataagctatttctataatcaaactgttttc 243  Q
    |||||||||||||||||||||||||||||||||||||||    
T  18684668 ggcttatgtataagctatttctataatcaaactgttttc 18684706  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 348
Target Start/End: Complemental strand, 38766848 - 38766815
Alignment:
Q  315 catgttataagttgtttctataaattctcacaaa 348  Q
    ||||||||||||||||||||||| ||||||||||    
T  38766848 catgttataagttgtttctataagttctcacaaa 38766815  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 290 - 359
Target Start/End: Complemental strand, 4055647 - 4055578
Alignment:
Q  290 aaataagctgaaaaccattgatggccatgttataagttgtttctataaattctcacaaacagtttaacaa 359  Q
    |||||||||||||||  || |||| ||||| ||||||| |||||||||| |||| |||||||||| ||||    
T  4055647 aaataagctgaaaacagtttatggacatgtcataagttatttctataaactctcccaaacagttttacaa 4055578  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 359
Target Start/End: Complemental strand, 39551215 - 39551171
Alignment:
Q  315 catgttataagttgtttctataaattctcacaaacagtttaacaa 359  Q
    ||||| |||||||||||| |||||||||| |||||||||| ||||    
T  39551215 catgtcataagttgtttccataaattctcccaaacagtttcacaa 39551171  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 257
Target Start/End: Complemental strand, 32578083 - 32578031
Alignment:
Q  206 gcttatgtataagctatttctataa-tcaaactgttttcatataagctatcct 257  Q
    |||||||| |||||||||||||||| ||||| |||| ||||||||||||||||    
T  32578083 gcttatgtgtaagctatttctataagtcaaattgttctcatataagctatcct 32578031  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 380
Target Start/End: Original strand, 34939783 - 34939873
Alignment:
Q  290 aaataagctgaaaaccattgatggccatgttataagttgtttctataaattctcacaaacagtttaacaactgtttatgtaacaagataag 380  Q
    ||||||||||||||| ||| |||| ||||| ||||| ||||||  |||  ||||  ||||||||| |||| ||||||||| || |||||||    
T  34939783 aaataagctgaaaacaatttatggacatgtcataagctgtttccgtaagctctccaaaacagtttcacaaatgtttatgtcactagataag 34939873  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 352
Target Start/End: Complemental strand, 41042053 - 41041991
Alignment:
Q  290 aaataagctgaaaaccattgatggccatgttataagttgtttctataaattctcacaaacagt 352  Q
    ||||||| |||||||   |||||| ||||| |||||||||||||||||||||||  |||||||    
T  41042053 aaataagttgaaaacagctgatggacatgtaataagttgtttctataaattctctgaaacagt 41041991  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 351
Target Start/End: Original strand, 39539713 - 39539749
Alignment:
Q  315 catgttataagttgtttctataaattctcacaaacag 351  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  39539713 catgtcataagttgtttctataaattctcccaaacag 39539749  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 350
Target Start/End: Original strand, 40145491 - 40145551
Alignment:
Q  290 aaataagctgaaaaccattgatggccatgttataagttgtttctataaattctcacaaaca 350  Q
    |||||||| |||||| ||| ||||  ||||||||||||||||| |||| ||||| ||||||    
T  40145491 aaataagcggaaaacaatttatggttatgttataagttgtttcgataagttctctcaaaca 40145551  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 339
Target Start/End: Complemental strand, 2767209 - 2767160
Alignment:
Q  290 aaataagctgaaaaccattgatggccatgttataagttgtttctataaat 339  Q
    ||||||| |||||||  ||||||| ||||| |||||||||||||||||||    
T  2767209 aaataagttgaaaacagttgatggacatgtaataagttgtttctataaat 2767160  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 369
Target Start/End: Original strand, 5157142 - 5157190
Alignment:
Q  321 ataagttgtttctataaattctcacaaacagtttaacaactgtttatgt 369  Q
    |||||||||||||||||  |||| |||||||||| |||| |||||||||    
T  5157142 ataagttgtttctataagctctcccaaacagtttcacaagtgtttatgt 5157190  T

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