View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13194_high_1 (Length: 849)
Name: NF13194_high_1
Description: NF13194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13194_high_1 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 44 - 493
Target Start/End: Complemental strand, 24493626 - 24493177
Alignment:
| Q |
44 |
ggtaaaggatgttttgtgactaacaaatactttttgtttggcttgtgtatgttatgcatggatcgtgtgatgggtctcaaaaattcagaggatgacgttg |
143 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24493626 |
ggtaaaggatgttttgtgaccaacaaatactttttgtttggcttgtgtatgttatgcatggatcgtgtgatgggtctcaaaaattcagaggatgacgttg |
24493527 |
T |
|
| Q |
144 |
atatgcgctccaatggtggtgtggtttgtgatgaggatgtaagcgtgggtgaaggtgatggttgaatgctatttgtgtttgaaggagtgggttgggttga |
243 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24493526 |
atatgcgctccaatggtggtgtggtttgtgatgaggatgtaagcgtgggtgaaggtgatggttgaatgctatttgtgtttgaaggagtgggttgggttga |
24493427 |
T |
|
| Q |
244 |
tggaggtgtggttgaattatggattacggtttctgaggttctaggctgatgtgggtgggccaagatattagggagtgggagccacggatgttgggaagtg |
343 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
24493426 |
tggaggtgtggttgaattatggattatggtttctgaggttctaggctgatgtgggtgggaaaagatattagggagtgggagccacggatgttgggaagtg |
24493327 |
T |
|
| Q |
344 |
ggcagtaatggaggtgaggtttgggggttttgatgggagaaaggaaactggtcttcaacaaaaacaacatgacgagataaatgcactcttcgagtggctc |
443 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24493326 |
agcagtaatggaggtgaggtttgggggttttgatgggagaaaggaaactggtcttcaacaaaaacaacatgacgagataaatgcactcttcgagtggctc |
24493227 |
T |
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| Q |
444 |
ggtctaggcaaatgtaagagtgatactgtgtagaataaccaaggaaaaca |
493 |
Q |
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| T |
24493226 |
ggtctagacaaatataagagtgatattgtgtagaataaccaaggaaaaca |
24493177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 84 - 493
Target Start/End: Complemental strand, 92951 - 92542
Alignment:
| Q |
84 |
gcttgtgtatgttatgcatggatcgtgtgatgggtctcaaaaattcagaggatgacgttgatatgcgctccaatggtggtgtggtttgtgatgaggatgt |
183 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
92951 |
gcttgtgtatgttatgcatggatcgtgtgatgggtctcaaatattcagaggatgacgttgatatgcgctccaatggtggtgtggtttgtgatgaggatgt |
92852 |
T |
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| Q |
184 |
aagcgtgggtgaaggtgatggttgaatgctatttgtgtttgaaggagtgggttgggttgatggaggtgtggttgaattatggattacggtttctgaggtt |
283 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
92851 |
aagcgtgagtgaaggtgatggttgaatgctatttgtgtttgaaggagtgggtttggttgatggaggtgtggttgaattatggattatggtttctgaggtt |
92752 |
T |
|
| Q |
284 |
ctaggctgatgtgggtgggccaagatattagggagtgggagccacggatgttgggaagtgggcagtaatggaggtgaggtttgggggttttgatgggaga |
383 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
92751 |
ctaggctgatgtgggtgggttaagatattagggagtgggagccacggatgttggggagtgggcagtaatggaggtgaggtttgggggttttgatgggaga |
92652 |
T |
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| Q |
384 |
aaggaaactggtcttcaacaaaaacaacatgacgagataaatgcactcttcgagtggctcggtctaggcaaatgtaagagtgatactgtgtagaataacc |
483 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| |
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| T |
92651 |
aaggaaactggtcttcaacaaaaacaacatgacgagataaatgcactcttcgagtggctcgatctagacaaatgtaagagtgatattgtgtagaataacc |
92552 |
T |
|
| Q |
484 |
aaggaaaaca |
493 |
Q |
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||| |||||| |
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| T |
92551 |
aagtaaaaca |
92542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 487 - 830
Target Start/End: Complemental strand, 22684888 - 22684545
Alignment:
| Q |
487 |
gaaaacaaaattaatctccttgttccttttttcttgactttaaattcatgttttatcacatagatgacacattttaacaaatttatgtgttttgttttat |
586 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
22684888 |
gaaatcaaaattaatctccttgttccttttttcttgactttaaattcatgttttatcacatagatgacacattttaacaaatttctgtgttttgttttat |
22684789 |
T |
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| Q |
587 |
ttataggttgtgactcctttggcaaaaattgccttaatattattgcctgttgcatcaagcatagaggaacttgtcgtcccttctcctaggctaagatgtt |
686 |
Q |
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| T |
22684788 |
ttataggttgtgactcctttggcaaaatttgccttaatattattgcctgttgcatcaagcatagaggaacttgtcgtcccttctcctaggctaagatgtt |
22684689 |
T |
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| Q |
687 |
atgctatgtctctttttatcagaacaactttagtgttttcaagtttatttgtggccctctcttttccatattttggtaagtattgtccatactattatta |
786 |
Q |
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| T |
22684688 |
atgctatgtctctttttattaaaacaactttagtgttttcaagtttatttgtggccctctcttttccatattttggtaagtattgtccatactattatta |
22684589 |
T |
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| Q |
787 |
ctacctttgtgcgttgctctattgcacttacacttctgatgaaa |
830 |
Q |
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| T |
22684588 |
ctacctttgtgcgttgctctgttgcacttacacttctgatgaaa |
22684545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 179; E-Value: 4e-96
Query Start/End: Original strand, 524 - 804
Target Start/End: Complemental strand, 22696146 - 22695870
Alignment:
| Q |
524 |
ctttaaattcatgttttatcacatagatgacacattttaacaaatttatgtgttttgttttatttataggttgtgactcctttggcaaaaattgccttaa |
623 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| ||||||||||||||||| |||||||| |||||||| |
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| T |
22696146 |
ctttaaattcatgttttatcacatagatgacaaattttaacaaatttctgtgttttattttacatataggttgtgactcctctggcaaaatatgccttaa |
22696047 |
T |
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| Q |
624 |
tattattgcctgttgcatcaagcatagaggaacttgtcgtcccttctcctaggctaagatgttatgctatgtctctttttatcagaacaactttagtgtt |
723 |
Q |
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| T |
22696046 |
cattattgcctattgcatcaagcatagaggaactt---gtcccttctcctaggctaagatgttatcctatgtctattctcatcagaacagctttagtggt |
22695950 |
T |
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| Q |
724 |
ttcaagtttatttgtggccctctcttttccatattttggtaagtattgtccatactattattactacctttgtgcgttgct |
804 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||| ||||| |
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| T |
22695949 |
ttcaagtttagttgtggccctctcttttccatattttggtaagttttgt-cataccattattactacctttgtgcattgct |
22695870 |
T |
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