View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13194_high_12 (Length: 386)
Name: NF13194_high_12
Description: NF13194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13194_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 180; Significance: 4e-97; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 21 - 380
Target Start/End: Original strand, 17075396 - 17075755
Alignment:
| Q |
21 |
catcatcatggagtcgctggtgttatttcttcgacaagaaagaaggttaagaaagtggtgcggccttttgctaaatccagttcaatagttataaagagga |
120 |
Q |
| |
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|||||| |||| | ||||||||||||||||||| |||| |||||||||||||||||||||||||| |||| |||||||| | || |||| ||| ||| |
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| T |
17075396 |
catcataatggtgacgctggtgttatttcttcggcaaggaagaaggttaagaaagtggtgcggcccattgcacaatccagtaccatcgttaacaagcgga |
17075495 |
T |
|
| Q |
121 |
agaaagtgaatggaattttgcggcattcggtatttagtttgaagaaggtggcgcggttgcccagcaaagaccgggccgccgttttgcacattttaaaatc |
220 |
Q |
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|||||||||| ||||||||||| || ||||| ||||| |||| |||||||||||| |||| |||||||| || || | ||||| ||||| |||||||| |
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| T |
17075496 |
agaaagtgaacggaattttgcgacactcggtgattagtctgaaaaaggtggcgcggctgcctagcaaagatcgttcctcagttttacacatcttaaaatc |
17075595 |
T |
|
| Q |
221 |
taaatcgagaaaattacaaggttcggatcgtcttaaaaaggcggtaagggtggtttcctcgggagtttcggatggtagttcctcgtcggggtcagttaac |
320 |
Q |
| |
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||||| ||||||||||||||| ||||| || |||||||||||||||| |||||||| ||||||| ||||||||||||||| || |||||||| |||||| |
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| T |
17075596 |
taaattgagaaaattacaaggctcggaacgccttaaaaaggcggtaaaagtggtttcttcgggagcttcggatggtagttcgtcatcggggtccgttaac |
17075695 |
T |
|
| Q |
321 |
aatgattgggttaattgggtggctgtgcatgggaatgagaaggttgtgattgatgatgtc |
380 |
Q |
| |
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||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||| |
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|
| T |
17075696 |
aatgattgggttaattgggtggcagtgcatggaaatgagaaggttgtgtttgatgatgtc |
17075755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 21 - 253
Target Start/End: Original strand, 11053470 - 11053702
Alignment:
| Q |
21 |
catcatcatggagtcgctggtgttatttcttcgacaagaaagaaggttaagaaagtggtgcggccttttgctaaatccagt-tcaatagttataaagagg |
119 |
Q |
| |
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||||||||||| | ||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||| || || | | | || || |
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| T |
11053470 |
catcatcatggtgacgctggtgttatttcatcggcaagaaagaaggttaagaaagtggtgcggcctattgcccaatccggtatctgt-gcaaacaatcgg |
11053568 |
T |
|
| Q |
120 |
aagaaagtgaatggaattttgcggcattcggtatttagtttgaagaaggtggcgcggttgcccagcaaagaccgggccgccgttttgcacattttaaaat |
219 |
Q |
| |
|
|||||||||||||| || ||||||| ||||| |||||||||| ||||||||||||||||| |||||||| ||| || || |||| || || ||||||| |
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| T |
11053569 |
aagaaagtgaatggggttctgcggcactcggtgattagtttgaaaaaggtggcgcggttgcctagcaaagatcggtccaccattttacatatcttaaaat |
11053668 |
T |
|
| Q |
220 |
ctaaatcgagaaaattacaaggttcggatcgtct |
253 |
Q |
| |
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|||||||||| |||||||||||||| || ||||| |
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| T |
11053669 |
ctaaatcgaggaaattacaaggttcagaccgtct |
11053702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 249 - 379
Target Start/End: Original strand, 11064036 - 11064166
Alignment:
| Q |
249 |
cgtcttaaaaaggcggtaagggtggtttcctcgggagtttcggatggtagttcctcgtcggggtcagttaacaatgattgggttaattgggtggctgtgc |
348 |
Q |
| |
|
||||||||||||| ||| | |||||||||||||| ||||||||| ||||||||||||||||| || ||||| ||||||||||| ||||||||||| |||| |
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|
| T |
11064036 |
cgtcttaaaaaggtggttaaggtggtttcctcggaagtttcggaaggtagttcctcgtcgggatcggttaataatgattgggtcaattgggtggcagtgc |
11064135 |
T |
|
| Q |
349 |
atgggaatgagaaggttgtgattgatgatgt |
379 |
Q |
| |
|
||| ||||||||| || ||| |||||||||| |
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|
| T |
11064136 |
atgagaatgagaaagtagtggttgatgatgt |
11064166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 151; Significance: 8e-80; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 21 - 379
Target Start/End: Complemental strand, 17684263 - 17683905
Alignment:
| Q |
21 |
catcatcatggagtcgctggtgttatttcttcgacaagaaagaaggttaagaaagtggtgcggccttttgctaaatccagttcaatagttat--aaaga- |
117 |
Q |
| |
|
||||||||||| | ||||||||||||||| ||| ||||||||||||| | |||||||||||||||| || |||| | | ||| || | ||| | |
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|
| T |
17684263 |
catcatcatggtgacgctggtgttatttcatcggcaagaaagaaggtcaggaaagtggtgcggcctattt-----tccaatccgatatttgtgcaaacaa |
17684169 |
T |
|
| Q |
118 |
--ggaagaaagtgaatggaattttgcggcattcggtatttagtttgaagaaggtggcgcggttgcccagcaaagaccgggccgccgttttgcacatttta |
215 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||| |||||||||| |||||||||| |||||| |||||||| ||| || ||||||| || || ||| |
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|
| T |
17684168 |
acggaagaaagtgaatggggttttgcggcactcggtgattagtttgaaaaaggtggcgcagttgcctagcaaagatcggtccaccgttttacatatctta |
17684069 |
T |
|
| Q |
216 |
aaatctaaatcgagaaaattacaaggttcggatcgtcttaaaaaggcggtaagggtggtttcctcgggagtttcggatggtagttcctcgtcggggtcag |
315 |
Q |
| |
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|||||||||||||| |||||||||||||| || ||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||| |||| | |
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| T |
17684068 |
aaatctaaatcgaggaaattacaaggttcagaccgtcttaaaaaggtggtaaaggtggtttcctcgggagtttcggaaggtagttcctcgtcgaggtcgg |
17683969 |
T |
|
| Q |
316 |
ttaacaatgattgggttaattgggtggctgtgcatgggaatgagaaggttgtgattgatgatgt |
379 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||||||||||| || | | |||||||||| |
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|
| T |
17683968 |
ttaataatgattgggttaattgggtggcagtgcatgggaatgagaaagtagcggttgatgatgt |
17683905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 201 - 364
Target Start/End: Complemental strand, 36160065 - 36159902
Alignment:
| Q |
201 |
gttttgcacattttaaaatctaaatcgagaaaattacaaggttcggatcgtcttaaaaaggcggtaagggtggtttcctcgggagtttcggatggtagtt |
300 |
Q |
| |
|
|||||||||||| ||||||||||| | ||||||||||| || ||||||||||| ||||||||||| | ||||| || ||||||| ||| ||| |||| |
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| T |
36160065 |
gttttgcacattctaaaatctaaagctagaaaattacatgggtcggatcgtctgaaaaaggcggtgaaggtggggtcttcgggagcttcagataaaagtt |
36159966 |
T |
|
| Q |
301 |
cctcgtcggggtcagttaacaatgattgggttaattgggtggctgtgcatgggaatgagaaggt |
364 |
Q |
| |
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| || || | ||||||||||| ||||||||||||| |||| ||||||||||||||||||||| |
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| T |
36159965 |
cttcttcatgttcagttaacaacgattgggttaattttgtggttgtgcatgggaatgagaaggt |
36159902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 21 - 379
Target Start/End: Complemental strand, 26741893 - 26741535
Alignment:
| Q |
21 |
catcatcatggagtcgctggtgttatttcttcgacaagaaagaaggttaagaaagtggtgcggccttttgctaaatccagttcaatagttataaagagga |
120 |
Q |
| |
|
||||||||||| | |||||||||||||| ||| | || ||||||||||||| ||||| || |||| ||||| |||| || | | |||| ||| ||| |
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|
| T |
26741893 |
catcatcatggtgatgctggtgttatttcatcggctaggaagaaggttaagagagtggcgcagcctattgctcaatcatgtacctttgttaacaagcgga |
26741794 |
T |
|
| Q |
121 |
agaaagtgaatggaattttgcggcattcggtatttagtttgaagaaggtggcgcggttgcccagcaaagaccgggccgccgttttgcacattttaaaatc |
220 |
Q |
| |
|
|||||||||||| || || ||| | |||| |||||||||| ||||||| ||| ||||| ||||||| || || | ||||| ||||| |||||||| |
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|
| T |
26741793 |
agaaagtgaatgagatcttacggaacccggtgattagtttgaaaaaggtggatcggctgccctgcaaagatcgttccacagttttacacatcttaaaatc |
26741694 |
T |
|
| Q |
221 |
taaatcgagaaaattacaaggttcggatcgtcttaaaaaggcggtaagggtggtttcctcgggagtttcggatggtagttcctcgtcggggtcagttaac |
320 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||| ||||| |||||||||||||| ||||||| ||||||||||||||| || ||||| ||||||||| |
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|
| T |
26741693 |
taagtcgagaaaattacaaggatcggatcgtcttaagaaggctgtaagggtggtttcttcgggagcttcggatggtagttcttcctcgggttcagttaac |
26741594 |
T |
|
| Q |
321 |
aatgattgggttaattgggtggctgtgcatgggaatgagaaggttgtgattgatgatgt |
379 |
Q |
| |
|
|| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
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|
| T |
26741593 |
aacgattgggttaattgggtggaagtgcatgggaatgagaaggttgtggttgatgatgt |
26741535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 136; Significance: 7e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 114 - 377
Target Start/End: Original strand, 10559739 - 10560002
Alignment:
| Q |
114 |
aagaggaagaaagtgaatggaattttgcggcattcggtatttagtttgaagaaggtggcgcggttgcccagcaaagaccgggccgccgttttgcacattt |
213 |
Q |
| |
|
|||||||||||||||||||| || ||||||| ||||| |||||||||| ||||||| || | |||| |||||||| | || ||||||| ||||| | |
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|
| T |
10559739 |
aagaggaagaaagtgaatgggtttctgcggcactcggtgattagtttgaaaaaggtggggcagctgcctagcaaagatcaatccaccgttttacacatct |
10559838 |
T |
|
| Q |
214 |
taaaatctaaatcgagaaaattacaaggttcggatcgtcttaaaaaggcggtaagggtggtttcctcgggagtttcggatggtagttcctcgtcggggtc |
313 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||| ||||||||||||| ||||||||| ||||||| ||| ||||||||||| || ||||| || |
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|
| T |
10559839 |
taaaatctaaatcgagaaaattacaaggatcagatcgtctcaaaaaggcggtaaaggtggtttcttcgggagcttcagatggtagttcttcctcgggttc |
10559938 |
T |
|
| Q |
314 |
agttaacaatgattgggttaattgggtggctgtgcatgggaatgagaaggttgtgattgatgat |
377 |
Q |
| |
|
|| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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|
| T |
10559939 |
agataacaatgattgggttaattgggtggcagtgcatgggaatgagaaggttgtagttgatgat |
10560002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 10558419 - 10558490
Alignment:
| Q |
20 |
acatcatcatggagtcgctggtgttatttcttcgacaagaaagaaggttaagaaagtggtgcggccttttgc |
91 |
Q |
| |
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|||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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|
| T |
10558419 |
acatcatcatggtgacgctggtgttatttcttcggcaagaaagaaggttaagaaagtggtgcggcctattgc |
10558490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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