View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13194_high_13 (Length: 381)
Name: NF13194_high_13
Description: NF13194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13194_high_13 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 324 - 381
Target Start/End: Complemental strand, 5313833 - 5313776
Alignment:
| Q |
324 |
tcgctcgagcgttaagattggatgtcttaacagacgtcgtgattaaggtcggtgcatc |
381 |
Q |
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| T |
5313833 |
tcgctcgagcgttaagattggatgtcttaacagacgtcgtgattaaggtcggtgcatc |
5313776 |
T |
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Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 67 - 173
Target Start/End: Complemental strand, 19455315 - 19455209
Alignment:
| Q |
67 |
gtcgaattgtatataactcaagtttagttcattatgttagcaaacttagttttcaactaaagttaaactcatttgattcatgaaccatgtttcacaaatt |
166 |
Q |
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| T |
19455315 |
gtcgaactgtatatagctcaagttcaactcatttagataacaaacttaattttcaactcaagttcagctcatttgattcatgaaccaagttcaacgaatt |
19455216 |
T |
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| Q |
167 |
aattgtc |
173 |
Q |
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| T |
19455215 |
aattgtc |
19455209 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 75 - 176
Target Start/End: Complemental strand, 7016224 - 7016123
Alignment:
| Q |
75 |
gtatataactcaagtttagttcattatgttagcaaacttagttttcaactaaagttaaactcatttgattcatgaaccatgtttcacaaattaattgtcg |
174 |
Q |
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| T |
7016224 |
gtatatagctcaagctcagcttattaggttaacaaacttagttttgagctcaagttcagctcatttggttcatgaaccaagttcaacaaatcaattgtcg |
7016125 |
T |
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| Q |
175 |
aa |
176 |
Q |
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|| |
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| T |
7016124 |
aa |
7016123 |
T |
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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 39802882 - 39802834
Alignment:
| Q |
109 |
aacttagttttcaactaaagttaaactcatttgattcatgaaccatgtt |
157 |
Q |
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| T |
39802882 |
aacttaattttcaactcaagttcgactcatttggttcatgaaccatgtt |
39802834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 40159745 - 40159701
Alignment:
| Q |
109 |
aacttagttttcaactaaagttaaactcatttgattcatgaacca |
153 |
Q |
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| T |
40159745 |
aacttaattttcaactcaagttcgactcatttgattcatgaacca |
40159701 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 151
Target Start/End: Complemental strand, 1072857 - 1072782
Alignment:
| Q |
76 |
tatataactcaagtttagttcattatgttagcaaacttagttttcaactaaagttaaactcatttgattcatgaac |
151 |
Q |
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| T |
1072857 |
tatataactcaagttcagttcattatattaacaaacttaattttcggctcaaactcaactcatttggttcatgaac |
1072782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 176
Target Start/End: Complemental strand, 9505269 - 9505169
Alignment:
| Q |
76 |
tatataactcaagtttagttcattatgttagcaaacttagttttcaactaaagttaaactcatttgattcatgaaccatgtttcacaaattaattgtcga |
175 |
Q |
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| T |
9505269 |
tatatatctcaagttcagctcatttatttaacgaacttaattttcagctcaagttcaactcatttggttcatgaaccaagttcaacgagttaattgtcga |
9505170 |
T |
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| Q |
176 |
a |
176 |
Q |
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| T |
9505169 |
a |
9505169 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 176
Target Start/End: Original strand, 32163540 - 32163633
Alignment:
| Q |
83 |
ctcaagtttagttcattatgttagcaaacttagttttcaactaaagttaaactcatttgattcatgaaccatgtttcacaaattaattgtcgaa |
176 |
Q |
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| T |
32163540 |
ctcaagttaagctcatttagttaacgaacttaattttcaactcaagtttagctcattaggttcatgaaccatgttcaaccagttaattgtcgaa |
32163633 |
T |
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