View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13194_high_16 (Length: 363)

Name: NF13194_high_16
Description: NF13194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13194_high_16
NF13194_high_16
[»] chr4 (4 HSPs)
chr4 (13-217)||(33550250-33550454)
chr4 (13-217)||(26230624-26230829)
chr4 (297-363)||(26230909-26230975)
chr4 (297-363)||(33550533-33550599)
[»] chr7 (2 HSPs)
chr7 (13-217)||(8335378-8335582)
chr7 (297-360)||(8335235-8335298)
[»] chr2 (2 HSPs)
chr2 (78-217)||(4684810-4684949)
chr2 (297-363)||(4684664-4684730)
[»] chr8 (1 HSPs)
chr8 (13-91)||(26632567-26632645)


Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 13 - 217
Target Start/End: Original strand, 33550250 - 33550454
Alignment:
Q  13 aatatcatcattttccagacaatgttgacattatttttggatactacggaaataatctttttaaagttataatgttcagggaagtattttgcgctactaa 112  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33550250 aatatcatcattttccaaacaatgttgacattatttttggatactacggaaataatctttttaaagttataatgttcagggaagtattttgcgctactaa 33550349  T
Q  113 aataccttcttttcatagtcgtagcatgtatccagaggaagtcattatatttgatatacacatttctgataatgatttaaacactccaatcaaggtacgt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33550350 aataccttcttttcatagtcgtagcatgtatccagaggaagtcattatatttgatatacacatttctgataatgatttaaacactccaatcaaggtacgt 33550449  T
Q  213 tatca 217  Q
    |||||    
T  33550450 tatca 33550454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 13 - 217
Target Start/End: Original strand, 26230624 - 26230829
Alignment:
Q  13 aatatcatcattttccagacaatgttgacattatttttggatactacggaaataat-ctttttaaagttataatgttcagggaagtattttgcgctacta 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26230624 aatatcatcattttccagacaatgttgacattatttttggatactacggaaataattctttttaaagttataatgttcagggaagtattttgcgctacta 26230723  T
Q  112 aaataccttcttttcatagtcgtagcatgtatccagaggaagtcattatatttgatatacacatttctgataatgatttaaacactccaatcaaggtacg 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26230724 aaataccttcttttcatagtcgtagcatgtatccagaggaagtcattatatttgatatacacatttctgataatgatttaaacactccaatcaaggtacg 26230823  T
Q  212 ttatca 217  Q
    ||||||    
T  26230824 ttatca 26230829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 297 - 363
Target Start/End: Original strand, 26230909 - 26230975
Alignment:
Q  297 agatgttgcccaatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtgttg 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26230909 agatgttgcccaatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtgttg 26230975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 297 - 363
Target Start/End: Original strand, 33550533 - 33550599
Alignment:
Q  297 agatgttgcccaatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtgttg 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33550533 agatgttgcccaatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtgttg 33550599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 13 - 217
Target Start/End: Complemental strand, 8335582 - 8335378
Alignment:
Q  13 aatatcatcattttccagacaatgttgacattatttttggatactacggaaataatctttttaaagttataatgttcagggaagtattttgcgctactaa 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8335582 aatatcatcattttccagacaatgttgacattatttttggatactatggaaataatctttttaaagttataatgttcagggaagttttttgcgctactaa 8335483  T
Q  113 aataccttcttttcatagtcgtagcatgtatccagaggaagtcattatatttgatatacacatttctgataatgatttaaacactccaatcaaggtacgt 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |    
T  8335482 aataccttcttttcatagtcgtagcatgtatccagaggaagtcattatatttgatatacacatttctgataatgatttcaacactccaatcaaggtacat 8335383  T
Q  213 tatca 217  Q
    |||||    
T  8335382 tatca 8335378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 297 - 360
Target Start/End: Complemental strand, 8335298 - 8335235
Alignment:
Q  297 agatgttgcccaatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtg 360  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8335298 agatgttgcccgatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtg 8335235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 78 - 217
Target Start/End: Complemental strand, 4684949 - 4684810
Alignment:
Q  78 gttataatgttcagggaagtattttgcgctactaaaataccttcttttcatagtcgtagcatgtatccagaggaagtcattatatttgatatacacattt 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4684949 gttataatgttcagggaagtattttgcgctactaaaataccttcttttcatagtcgtagcatgtatccagaggaagtcattatatttgatatacacattt 4684850  T
Q  178 ctgataatgatttaaacactccaatcaaggtacgttatca 217  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  4684849 ctgataatgatttaaacactccaatcaaggtacgttatca 4684810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 297 - 363
Target Start/End: Complemental strand, 4684730 - 4684664
Alignment:
Q  297 agatgttgcccaatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtgttg 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4684730 agatgttgcccaatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtgttg 4684664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 13 - 91
Target Start/End: Original strand, 26632567 - 26632645
Alignment:
Q  13 aatatcatcattttccagacaatgttgacattatttttggatactacggaaataatctttttaaagttataatgttcag 91  Q
    |||||||||||||| | || |||||||||||| |||||||||| ||   ||||||||||||||||||||||||||||||    
T  26632567 aatatcatcatttttccgataatgttgacattctttttggataatataaaaataatctttttaaagttataatgttcag 26632645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University