View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13194_high_28 (Length: 339)
Name: NF13194_high_28
Description: NF13194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13194_high_28 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 8 - 339
Target Start/End: Original strand, 22684532 - 22684864
Alignment:
| Q |
8 |
caccagagacgcttt-catcagaagtgtaagtgcaatagagcaacgcacaaaggtagtaataatagtatggacaatacttaccaaaatatggaaaagaga |
106 |
Q |
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| T |
22684532 |
caccagagacacttttcatcagaagtgtaagtgcaacagagcaacgcacaaaggtagtaataatagtatggacaatacttaccaaaatatggaaaagaga |
22684631 |
T |
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| Q |
107 |
gggccacaaataaacttgaaaacactaaagttgttctgataaaaagagacatagcataacatcttagcctaggagaagggacgataagttcctctatgct |
206 |
Q |
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| T |
22684632 |
gggccacaaataaacttgaaaacactaaagttgttttaataaaaagagacatagcataacatcttagcctaggagaagggacgacaagttcctctatgct |
22684731 |
T |
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| Q |
207 |
tgatgcaacaggcaataatattaaggcaatttttgccaaaggagtcacaacctataaataaaacaaaacacataaatttgttaaaatgtgtcatctatgt |
306 |
Q |
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| T |
22684732 |
tgatgcaacaggcaataatattaaggcaaattttgccaaaggagtcacaacctataaataaaacaaaacacagaaatttgttaaaatgtgtcatctatgt |
22684831 |
T |
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| Q |
307 |
gataaaacatgaatttaaagtcaagaaaaaagg |
339 |
Q |
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| T |
22684832 |
gataaaacatgaatttaaagtcaagaaaaaagg |
22684864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 46 - 326
Target Start/End: Original strand, 22695870 - 22696146
Alignment:
| Q |
46 |
agcaacgcacaaaggtagtaataatagtatggacaatacttaccaaaatatggaaaagagagggccacaaataaacttgaaaacactaaagttgttctga |
145 |
Q |
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| T |
22695870 |
agcaatgcacaaaggtagtaataatggtatg-acaaaacttaccaaaatatggaaaagagagggccacaactaaacttgaaaccactaaagctgttctga |
22695968 |
T |
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| Q |
146 |
taaaaagagacatagcataacatcttagcctaggagaagggacgataagttcctctatgcttgatgcaacaggcaataatattaaggcaatttttgccaa |
245 |
Q |
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| T |
22695969 |
tgagaatagacataggataacatcttagcctaggagaagggac---aagttcctctatgcttgatgcaataggcaataatgttaaggcatattttgccag |
22696065 |
T |
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| Q |
246 |
aggagtcacaacctataaataaaacaaaacacataaatttgttaaaatgtgtcatctatgtgataaaacatgaatttaaag |
326 |
Q |
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| T |
22696066 |
aggagtcacaacctatatgtaaaataaaacacagaaatttgttaaaatttgtcatctatgtgataaaacatgaatttaaag |
22696146 |
T |
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