View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13194_high_33 (Length: 325)
Name: NF13194_high_33
Description: NF13194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13194_high_33 |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 26 - 324
Target Start/End: Original strand, 1794528 - 1794827
Alignment:
| Q |
26 |
cggaacatcaaatataaaagaaagactgattcaatgaagcaaaactatatagtactatttataatatagttcatgagtgaaccattagtctcagaatgac |
125 |
Q |
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| T |
1794528 |
cggaacatcaaatataaaagaaagactgattcaatgaagcaaaacgatatagtactatttataatatagttcatgaatgaaccattagtctcagaatgac |
1794627 |
T |
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| Q |
126 |
ccgtactgaatttttcccattcactcaactctaaaacattattatgataattctcgtattcaccaaattgaaatccgaaaatttgcatccacatgttagg |
225 |
Q |
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| T |
1794628 |
ccgtactgaatttttcccattcactcaactctaaaacattattatgataattctcatattcaccaaattgaaatccgaaaatttgcatccacatgttagg |
1794727 |
T |
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| Q |
226 |
tgaatacaaaggagcgtcattgatgaatatagttctttttaga-ccccttaatgtttcttagaaacaacactgccaatactgctattgacactcccttca |
324 |
Q |
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| T |
1794728 |
tgaatacaaaggagcgtcattgatgaatatagttctttttagacccccttaatgtttcttagaaacaacactgccaatactgctattgacactcccttca |
1794827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 47 - 240
Target Start/End: Original strand, 1811408 - 1811603
Alignment:
| Q |
47 |
aagactgattcaatgaagcaaaactatatagtactatttataatatagttcatgagtgaaccattagtctcagaatgacccgtactgaattt-ttcccat |
145 |
Q |
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| T |
1811408 |
aagactgattcaatgaagcaaaatgatttagtactatttataatataattcatgagtgaggcattagttccaaaatgactcataatggatttcttcccat |
1811507 |
T |
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| Q |
146 |
tcactcaactctaaaa-cattattatgataattctcgtattcaccaaattgaaatccgaaaatttgcatccacatgttaggtgaatacaaaggagc |
240 |
Q |
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| T |
1811508 |
tcactcaactctaaaaacattattttgataactcccatattcatcaaattgaaatccaaaaatttgcatccacatgttaggtgaatccaaaggagc |
1811603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 84 - 249
Target Start/End: Original strand, 1814591 - 1814757
Alignment:
| Q |
84 |
ttataatatagttcatgagtgaaccattagtctcagaatgacccgtactgaattt-ttcccattcactcaactctaaaacattattatgataattctcgt |
182 |
Q |
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||||| |||||||||||| |||| || ||||| || |||||| | |||||||||| |||||||||||||||||||||||||||||||| ||||||| | |
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| T |
1814591 |
ttatattatagttcatgattgaatcactagtcccacaatgactcatactgaatttcttcccattcactcaactctaaaacattattatcataattcctat |
1814690 |
T |
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| Q |
183 |
attcaccaaattgaaatccgaaaatttgcatccacatgttaggtgaatacaaaggagcgtcattgat |
249 |
Q |
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| T |
1814691 |
attcatcaaattgaaatccaaacatttgcatccacattttaggtgaatccaaaggagcctcattgat |
1814757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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