View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13194_high_35 (Length: 319)
Name: NF13194_high_35
Description: NF13194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13194_high_35 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-178; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-178
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 8188087 - 8188405
Alignment:
| Q |
1 |
agattgataaggagaagaagaatgacttgattagtggtactagtgatggttttaggatagaagacataagcaacacaacgaaaccccgaagcccagtgat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8188087 |
agattgataaggagaagaagaatgacttgattagtggtactagtgatggttttaggatagaagacataagcaacacaacgaaaccccgaagcccagtgat |
8188186 |
T |
|
| Q |
101 |
agacatagatactgaggatgctatttgtatgcgtactagagctcgttattcgcttgaaggtttcagtcttgatgagcttgagacctttcttcaagagacc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8188187 |
agacatagatactgaggatgctatttgtatgcgtactagagctcgttattcgcttgaaggtttcagtcttgatgagcttgagacctttcttcaagagact |
8188286 |
T |
|
| Q |
201 |
gatgatgaagatgatgttcaaaatgtcgatgatgaagaagagtataaaaaatttctagcagctgtattacagggtggagaacgtgacggtctttcatctc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8188287 |
gatgatgaagatgatgttcaaaatgtcgatgatgaagaagagtataaaaaatttctagcagctgtattacagggtggagaacgtgacggtctttcatctc |
8188386 |
T |
|
| Q |
301 |
atgaaaatgaaaaccttga |
319 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
8188387 |
atgaaaatgaaaaccttga |
8188405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University