View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13194_high_38 (Length: 315)
Name: NF13194_high_38
Description: NF13194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13194_high_38 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 126; Significance: 6e-65; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 186 - 315
Target Start/End: Original strand, 24493497 - 24493626
Alignment:
| Q |
186 |
cacaaaccacaccaccattggagcgcatatcaacgtcatcctctgaatttttgagacccatcacacgatccatgcataacatacacaagccaaacaaaaa |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24493497 |
cacaaaccacaccaccattggagcgcatatcaacgtcatcctctgaatttttgagacccatcacacgatccatgcataacatacacaagccaaacaaaaa |
24493596 |
T |
|
| Q |
286 |
gtatttgttagtcacaaaacatcctttacc |
315 |
Q |
| |
|
||||||||| |||||||||||||||||||| |
|
|
| T |
24493597 |
gtatttgttggtcacaaaacatcctttacc |
24493626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 39129070 - 39128895
Alignment:
| Q |
17 |
atggacatcatcaccatcaccaacagcacagtactttgacttatcagaacccttaaaaatcatttttcaacagtagccttcacaccaaagaaaagcctgt |
116 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39129070 |
atggccatcatcaccaccaccaacagcacagtactttgacttatcagaacccttaaaaatcatttttcaacagtagccttcacaccaaagaaaagcctgt |
39128971 |
T |
|
| Q |
117 |
gnnnnnnnnnnnnnnnncaataaataagcttccttcaagaaacttctacaatacacttccaaaagcaaacacaaac |
192 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39128970 |
gaaaaaaaaccaaaaaacaataaataagcttccttcaagaaacttctacaatacacttccaaaagcaaacacaaac |
39128895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 95
Target Start/End: Original strand, 39496028 - 39496094
Alignment:
| Q |
29 |
accatcaccaacagcacagtactttgacttatcagaacccttaaaaatcatttttcaacagtagcct |
95 |
Q |
| |
|
|||| |||||||| ||||| |||||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
39496028 |
accaccaccaacaccacagaactttgacttatcagaacccttaaaagccatttttcaacggtagcct |
39496094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 186 - 275
Target Start/End: Original strand, 92862 - 92951
Alignment:
| Q |
186 |
cacaaaccacaccaccattggagcgcatatcaacgtcatcctctgaatttttgagacccatcacacgatccatgcataacatacacaagc |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
92862 |
cacaaaccacaccaccattggagcgcatatcaacgtcatcctctgaatatttgagacccatcacacgatccatgcataacatacacaagc |
92951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University