View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13194_high_39 (Length: 314)
Name: NF13194_high_39
Description: NF13194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13194_high_39 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 26993116 - 26992811
Alignment:
| Q |
1 |
gagagaatgaaacggttactcatgttatgggaagaagtgattattatgtgtgatagaaatctgagactatacataaaagaaagtgaacaagtactccaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
26993116 |
gagagaatgaaacggttactcatgtaatgggaagaagtgattattatgcatgatagaaatctgagactatgcataaaagaaagtgaacaaatactccaaa |
26993017 |
T |
|
| Q |
101 |
atttttgcaaaccaaatgccaaggaggaaagagaagcaagccaagcgcaattggtttaactcccacgactacttttggaatcccgctctccaccaagctc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26993016 |
atttttgcaaaccaaatgccaaggaggaaagagaagcaagccaagcgcaattggtttaactcccacgactacttttggaatcccgctctccaccaagctc |
26992917 |
T |
|
| Q |
201 |
caatactctttcgatctcaagcgcttttccatcaacatagaccaatgatcataatggactatcaaatctaggtatggtaggttggacgaaattgctattc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26992916 |
caatactctttcgatctcaagcgcttttccatcaacatagaccaatgatcataatggactatcaaatctaggtatggtaggttggacgaaattgctattc |
26992817 |
T |
|
| Q |
301 |
tctgct |
306 |
Q |
| |
|
|||||| |
|
|
| T |
26992816 |
tctgct |
26992811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 175 - 306
Target Start/End: Original strand, 1755394 - 1755524
Alignment:
| Q |
175 |
ttggaatcccgctctccaccaagctccaatactctttcgatctcaagcgcttttccatcaacatagaccaatgatcataatggactatcaaatctaggta |
274 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| | ||| |||||||| ||||| |
|
|
| T |
1755394 |
ttggaatctcgctctccaccaagctccaatactctttcgatctcaagagattttccatcaacatagaccaatgatcatagt-gaccatcaaatcaaggta |
1755492 |
T |
|
| Q |
275 |
tggtaggttggacgaaattgctattctctgct |
306 |
Q |
| |
|
||| |||||||||||||||||||||||||||| |
|
|
| T |
1755493 |
tggcaggttggacgaaattgctattctctgct |
1755524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 195 - 303
Target Start/End: Complemental strand, 12793938 - 12793831
Alignment:
| Q |
195 |
aagctccaatactctttcgatctcaagcgcttttccatcaacatagaccaatgatcataatggactatcaaatctaggtatggtaggttggacgaaattg |
294 |
Q |
| |
|
|||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||| ||| ||| ||||||||||||| |||||| || |||||| |
|
|
| T |
12793938 |
aagctccagtactctttcgatctcaagagattttccatcaacatagaccaatgatcataat-gaccatcgaatctaggtatggcaggttgaacaaaattg |
12793840 |
T |
|
| Q |
295 |
ctattctct |
303 |
Q |
| |
|
|||||||| |
|
|
| T |
12793839 |
ttattctct |
12793831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University