View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13194_high_43 (Length: 304)
Name: NF13194_high_43
Description: NF13194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13194_high_43 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 48357893 - 48358173
Alignment:
| Q |
1 |
aaaacatccctacattgagacagaatatggtcctgccaaggtacgtatcatcatcatattgatcatgagcaattcttgttataatttcttggctataaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
48357893 |
aaaacatccctacattgagacagaatatggtcctgccaaggta----tcatcatcatattgatcatgagcaat-------ataatttcttggctataaaa |
48357981 |
T |
|
| Q |
101 |
ctagaagaaagtcttactctttttaattgtaacatttttctttatgaatacgttgttagattgctatggaagtggtagagggtaagctgcggcctacact |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48357982 |
ctagaagaaagtcttactctttttaattgtaacatttttatttatgaatacgttgttagattgctatggaagtggtagagggtaagctgcggcctacact |
48358081 |
T |
|
| Q |
201 |
tccgtcaagggatgatggtgagcatttgggagaattgattgaccttatacgcctttgttgggatggaactccatccactagaccatcctttg |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48358082 |
tccgtcaagggatgatggtgagcatttgggagaattgattgaccttatacgcctttgttgggatggaactccatccactagaccatcctttg |
48358173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University