View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13194_high_5 (Length: 514)

Name: NF13194_high_5
Description: NF13194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13194_high_5
NF13194_high_5
[»] chr8 (2 HSPs)
chr8 (4-514)||(25011208-25011720)
chr8 (457-496)||(4752802-4752841)


Alignment Details
Target: chr8 (Bit Score: 477; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 4 - 514
Target Start/End: Complemental strand, 25011720 - 25011208
Alignment:
Q  4 tgagatgga-catcatcaagatgcacacaggcagaggatcgttgactggatcagtgctgctggtggtactgcaggtgcatttgatgttacaaccaaaggg 102  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25011720 tgagatggatcataatcaagatgcacacaggcagaggatcgttgactggatcagtgctgctggtggtactgcaggtgcatttgatgttacaaccaaaggg 25011621  T
Q  103 attcttcactctgtgagtactcaacttgacggtttcaataatttctcttcaaacttactcttcaatcctgtggaattcttcgaatagtgtatagcactta 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  25011620 attcttcactctgtgagtactcaacttgacggtttcaataatttctcttcaaacttactcttcaatcctgtggaattcttcgaatagtgtatagcacttt 25011521  T
Q  203 cacgaaacgataatttgacaaagcaacgtgttt-cagatatactagtttcaccagcttagtggaatttgtttacaatctttttgtagcaagacaacaatc 301  Q
      ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25011520 ttcgaaacgataatttgacaaagcaacgtgttttcagatatactagtttcaccagcttagtggaatttgtttacaatctttttgtagcaagacaacaatc 25011421  T
Q  302 tactatgtttcttgagcttttgttttttccccaataacagtgaagttacaatgacgatgcttctagtgaaagaattggatttggtgcagtcacaaatttc 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25011420 tactatgtttcttgagcttttgttttttccccaataacagtgaagttacaatgacgatgcttctagtgaaagaattggatttggtgcagtcacaaatttc 25011321  T
Q  402 atgtattcacacagtcagcacattagtgatggttggatcgtgattagactgtcatgagttcaaatcctatatgggacaattgtaaaatgatcattagtgc 501  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  25011320 atgtattcacacagtcagcacattagtgatggttggatcgtgattagactgtcatgagttcaaatcctatatggaacaattgtaaaatgatcattagtgc 25011221  T
Q  502 taacctttattaa 514  Q
    |||||||||||||    
T  25011220 taacctttattaa 25011208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 457 - 496
Target Start/End: Complemental strand, 4752841 - 4752802
Alignment:
Q  457 gagttcaaatcctatatgggacaattgtaaaatgatcatt 496  Q
    ||||||||||||||||||| ||| ||||||||||||||||    
T  4752841 gagttcaaatcctatatggaacagttgtaaaatgatcatt 4752802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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