View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13194_high_6 (Length: 512)

Name: NF13194_high_6
Description: NF13194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13194_high_6
NF13194_high_6
[»] chr1 (9 HSPs)
chr1 (17-512)||(29812317-29812812)
chr1 (23-151)||(48060858-48060988)
chr1 (372-459)||(29813504-29813592)
chr1 (377-462)||(48050737-48050822)
chr1 (390-452)||(48035896-48035958)
chr1 (383-436)||(48040301-48040354)
chr1 (397-449)||(48056107-48056159)
chr1 (397-454)||(48042967-48043024)
chr1 (387-419)||(48048787-48048819)


Alignment Details
Target: chr1 (Bit Score: 425; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 17 - 512
Target Start/End: Original strand, 29812317 - 29812812
Alignment:
Q  17 ctgtggcggaaaccaatctataagattaattatagtttcactagtgatcaaaactatagatcatgtcatgaaatttaagatcattaagacagagacccaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29812317 ctgtggcggaaaccaatctataagattaattatagtttcactagtgatcaaaactatagatcatgtcatgaaatttaagatcattaagacagagacccaa 29812416  T
Q  117 caatgcacgttgagtggttatcatggcagggtttagctaaacaaacaactcaggataatttggtttaccataagaattatcagagaatctacatgcttat 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29812417 caatgcacgttgagtggttatcatggcagggtttagctaaacaaacaactcaggataatttggtttaccataagaattatcagagaatctacatgcttat 29812516  T
Q  217 ttaccattcagtatcaattatggatttatctttaaagacaaagtttgataaactatgactcaccacaatcttaccaacatgtttttcagccaacactgct 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29812517 ttaccattcagtatcaattatggatttatctttaaagacaaagtttgataaactatgactcaccacaatcttaccaacatgtttttcagccaacactgct 29812616  T
Q  317 tccgaatcttagtaagtatagattcnnnnnnnnnnnnnnnnnnnnnctaaatgtataaagactgatgcttatgggtatttaactaaccaattaataagtc 416  Q
    |||||||||||||||||||||||||                     ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29812617 tccgaatcttagtaagtatagattcaaaacaaaacaaaagaaaaaactaaatgtataaagactgatgcttatgggtatttaactaaccaattaataagtc 29812716  T
Q  417 aactttgtcagctaccagatcttgaacaataaataaaaaacactgatacttattttacttgtatttgattaaaaagtattgaaaagtaaaactcct 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  29812717 aactttgtcagctaccagatcttgaacaataaataaaaaacactgatacttattttatttgtatttgattaaaaagtattgaaaagttaaactcct 29812812  T

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Target: chr1; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 23 - 151
Target Start/End: Complemental strand, 48060988 - 48060858
Alignment:
Q  23 cggaaaccaatctataagattaattatagtttcactagtgatcaaaactatagatcatgtcatgaaatttaagatcattaagac--agagacccaacaat 120  Q
    |||||||| ||||||||||||  || ||||||||||| |||||||||||||||| |||||||| |||||||||| ||||| |||  |||||||||||||     
T  48060988 cggaaacctatctataagattgcttctagtttcactattgatcaaaactatagaacatgtcattaaatttaagagcattaggacaaagagacccaacaaa 48060889  T
Q  121 gcacgttgagtggttatcatggcagggttta 151  Q
    | ||| |||||||||||||||||||||||||    
T  48060888 gtacgctgagtggttatcatggcagggttta 48060858  T

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Target: chr1; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 372 - 459
Target Start/End: Original strand, 29813504 - 29813592
Alignment:
Q  372 taaagactgatgcttatgggtattt-aactaaccaattaataagtcaactttgtcagctaccagatcttgaacaataaataaaaaacac 459  Q
    |||| ||||||| |||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||    
T  29813504 taaaaactgatgtttatgggtattttaactaaccaattaataagtcaaccttgtcagcttccagatcttcaacaataaataaaaaacac 29813592  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 377 - 462
Target Start/End: Complemental strand, 48050822 - 48050737
Alignment:
Q  377 actgatgcttatgggtatttaactaaccaattaataagtcaactttgtcagctaccagatcttgaacaataaataaaaaacactga 462  Q
    |||||||||||| |  ||| ||||||||||||||||||||| | ||||||||| | ||||||| ||||||||| |||||| |||||    
T  48050822 actgatgcttattgagattcaactaaccaattaataagtcatccttgtcagcttcaagatcttcaacaataaaaaaaaaatactga 48050737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 390 - 452
Target Start/End: Complemental strand, 48035958 - 48035896
Alignment:
Q  390 ggtatttaactaaccaattaataagtcaactttgtcagctaccagatcttgaacaataaataa 452  Q
    ||||| |||||||||||||||||||||||  ||||||||| |||  |||| ||||||||||||    
T  48035958 ggtatataactaaccaattaataagtcaatcttgtcagctgccaactcttcaacaataaataa 48035896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 383 - 436
Target Start/End: Complemental strand, 48040354 - 48040301
Alignment:
Q  383 gcttatgggtatttaactaaccaattaataagtcaactttgtcagctaccagat 436  Q
    |||||||||||||||| |||||||||||||||||||| || ||| || ||||||    
T  48040354 gcttatgggtatttaattaaccaattaataagtcaaccttatcaacttccagat 48040301  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 397 - 449
Target Start/End: Complemental strand, 48056159 - 48056107
Alignment:
Q  397 aactaaccaattaataagtcaactttgtcagctaccagatcttgaacaataaa 449  Q
    ||||||||||||||||||||||| ||||||||| | ||||||| | |||||||    
T  48056159 aactaaccaattaataagtcaacattgtcagcttcaagatcttcagcaataaa 48056107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 454
Target Start/End: Complemental strand, 48043024 - 48042967
Alignment:
Q  397 aactaaccaattaataagtcaactttgtcagctaccagatcttgaacaataaataaaa 454  Q
    ||||||||||||||| ||||||| ||||||||  | ||||||| ||||||||| ||||    
T  48043024 aactaaccaattaattagtcaacattgtcagcatcaagatcttcaacaataaaaaaaa 48042967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 419
Target Start/End: Complemental strand, 48048819 - 48048787
Alignment:
Q  387 atgggtatttaactaaccaattaataagtcaac 419  Q
    |||||||||||| ||||||||||||||||||||    
T  48048819 atgggtatttaattaaccaattaataagtcaac 48048787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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