View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13194_high_9 (Length: 408)

Name: NF13194_high_9
Description: NF13194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13194_high_9
NF13194_high_9
[»] chr2 (17 HSPs)
chr2 (4-375)||(6915171-6915542)
chr2 (124-222)||(10543505-10543603)
chr2 (124-222)||(10471307-10471405)
chr2 (124-222)||(28106207-28106305)
chr2 (142-222)||(27966389-27966469)
chr2 (124-222)||(10859023-10859121)
chr2 (235-291)||(10492777-10492833)
chr2 (234-286)||(28105350-28105402)
chr2 (228-291)||(10463585-10463648)
chr2 (228-275)||(10507349-10507396)
chr2 (240-291)||(10860707-10860758)
chr2 (229-291)||(10474161-10474223)
chr2 (235-291)||(7476566-7476622)
chr2 (240-291)||(10848803-10848854)
chr2 (143-205)||(9081351-9081413)
chr2 (234-291)||(7478731-7478788)
chr2 (151-215)||(10505487-10505551)
[»] chr7 (5 HSPs)
chr7 (124-222)||(15044800-15044898)
chr7 (37-127)||(15043971-15044061)
chr7 (224-295)||(15045570-15045641)
chr7 (322-375)||(15047553-15047606)
chr7 (4-39)||(15043819-15043854)
[»] chr8 (1 HSPs)
chr8 (239-290)||(44307022-44307073)
[»] chr5 (1 HSPs)
chr5 (124-222)||(33601026-33601124)


Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 4 - 375
Target Start/End: Complemental strand, 6915542 - 6915171
Alignment:
Q  4 aaatcacccttccgaatgacgccctcataaactcttagatatgttaactgaccaaacttcctttgctccaacttgaaagccaatgctacaaggggcccat 103  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  6915542 aaatcacccttccgaatgacaccctcataaactcttagatatgttaactgaccaaacttcgtttgctccaacttgaaagccaatgctacaagaggcccat 6915443  T
Q  104 cgggacttccagtcagctgaaccttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatc 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  6915442 cgggacttccagtcagctgaaccttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataactaactacaccatc 6915343  T
Q  204 cagaagtggttgtacccccgtgtttttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgctccctcaaggtca 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6915342 cagaagtggttgtacccccgtgtttttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgctccctcaaggtca 6915243  T
Q  304 gcagctgaaatgttctcatcatcgctaagaaacgcttcagcaagtacatcatctacctctgacacaggttct 375  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6915242 gcagctgaaatgttctcatcatcactaagaaacgcttcagcaagtacatcatctacctctgacacagtttct 6915171  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 124 - 222
Target Start/End: Original strand, 10543505 - 10543603
Alignment:
Q  124 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 222  Q
    ||||| |||||||||||||||||| | ||||||||||||||| ||||| | ||||| ||||||||| ||| ||||||||||| |||| |||||| ||||    
T  10543505 accttttcctcattcttggattggacgagagcataattactagcttcagttggacacggcaaataattaagtacaccatccaaaagtagttgtaacccc 10543603  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 124 - 222
Target Start/End: Original strand, 10471307 - 10471405
Alignment:
Q  124 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 222  Q
    ||||| ||||||||||| |||||| | ||||||||||||||| ||||| | ||||| ||||||||| ||| ||||||||||| |||| |||||| ||||    
T  10471307 accttttcctcattcttagattggacgagagcataattactagcttcagttggacacggcaaataattaagtacaccatccaaaagtagttgtagcccc 10471405  T

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Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 124 - 222
Target Start/End: Complemental strand, 28106305 - 28106207
Alignment:
Q  124 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 222  Q
    ||||| ||| ||| ||| ||||||||||||| |||||||||| ||||||| ||||| ||||||||| ||| ||||||||||| |||| |||||| ||||    
T  28106305 accttttccccatgcttagattggtcaagagtataattactagcttcaattggacacggcaaataattaattacaccatccaaaagtagttgtagcccc 28106207  T

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Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 27966389 - 27966469
Alignment:
Q  142 gattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 222  Q
    ||||||||||||| |||||||||| ||||||| ||||| ||||||||| ||| ||||||||||| |||| |||||| ||||    
T  27966389 gattggtcaagagtataattactagcttcaattggacacggcaaataattaattacaccatccaaaagtagttgtagcccc 27966469  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 124 - 222
Target Start/End: Original strand, 10859023 - 10859121
Alignment:
Q  124 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 222  Q
    ||||| ||| ||||||| |||| ||| |||| |||||||||||||||| | ||||| ||||||||| ||  ||||||||||| |||| |||||| ||||    
T  10859023 accttttccccattcttagatttgtcgagagaataattactaacttcagttggacagggcaaataattagttacaccatccaaaagtagttgtagcccc 10859121  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 235 - 291
Target Start/End: Original strand, 10492777 - 10492833
Alignment:
Q  235 gcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 291  Q
    |||||||||||||| ||||||| ||||||  |||||||||| |||||||||||||||    
T  10492777 gcactacccatgaaaaccggtacaaatttatgtgctatggttgccctacgaattgct 10492833  T

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Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 234 - 286
Target Start/End: Complemental strand, 28105402 - 28105350
Alignment:
Q  234 agcactacccatgaataccggtataaatttccgtgctatggtagccctacgaa 286  Q
    |||| ||||||||||||| |||||||| |||||||||||||| ||||||||||    
T  28105402 agcattacccatgaatactggtataaacttccgtgctatggtggccctacgaa 28105350  T

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Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 228 - 291
Target Start/End: Original strand, 10463585 - 10463648
Alignment:
Q  228 tttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 291  Q
    ||||| ||||||||||||||| |  |||||||||||||||||||| || || ||||||||||||    
T  10463585 tttgaaagcactacccatgaaaaatggtataaatttccgtgctatcgtggctctacgaattgct 10463648  T

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Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 228 - 275
Target Start/End: Original strand, 10507349 - 10507396
Alignment:
Q  228 tttgacagcactacccatgaataccggtataaatttccgtgctatggt 275  Q
    ||||| |||||| ||||||||||| |||||||||||||||||||||||    
T  10507349 tttgaaagcactgcccatgaatacgggtataaatttccgtgctatggt 10507396  T

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Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 240 - 291
Target Start/End: Original strand, 10860707 - 10860758
Alignment:
Q  240 acccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 291  Q
    |||||||||||| |||||||||||||||||||||||  ||||||||| ||||    
T  10860707 acccatgaatactggtataaatttccgtgctatggtgaccctacgaactgct 10860758  T

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Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 291
Target Start/End: Original strand, 10474161 - 10474223
Alignment:
Q  229 ttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 291  Q
    |||| |||||| ||||||||||  |||||||| |||||||||||||| |||||||||| ||||    
T  10474161 ttgaaagcactgcccatgaatattggtataaacttccgtgctatggtggccctacgaactgct 10474223  T

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Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 291
Target Start/End: Complemental strand, 7476622 - 7476566
Alignment:
Q  235 gcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 291  Q
    |||||||||||||| ||||||| ||||||| ||||||| || |||||| ||||||||    
T  7476622 gcactacccatgaaaaccggtacaaatttctgtgctatagttgccctatgaattgct 7476566  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 240 - 291
Target Start/End: Original strand, 10848803 - 10848854
Alignment:
Q  240 acccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 291  Q
    |||||||||||| |||||||||||  |||||||||| |||||||||| ||||    
T  10848803 acccatgaatactggtataaatttgtgtgctatggtggccctacgaactgct 10848854  T

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Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 9081413 - 9081351
Alignment:
Q  143 attggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatcca 205  Q
    ||||||| || |||||||||||  ||||||| ||||| ||||||||| ||| |||||||||||    
T  9081413 attggtcgagcgcataattacttgcttcaattggacacggcaaataattaagtacaccatcca 9081351  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 291
Target Start/End: Complemental strand, 7478788 - 7478731
Alignment:
Q  234 agcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 291  Q
    |||||| |||||||| |||||||||||||| |||||| |||| |||||| ||| ||||    
T  7478788 agcactgcccatgaagaccggtataaatttgcgtgctctggttgccctaagaactgct 7478731  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 10505487 - 10505551
Alignment:
Q  151 agagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttg 215  Q
    ||||||||||||||| ||||| | ||||| ||||||||| |||  |||||||||| |||| ||||    
T  10505487 agagcataattactagcttcagttggacacggcaaataattaagcacaccatccaaaagtagttg 10505551  T

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Target: chr7 (Bit Score: 59; Significance: 7e-25; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 124 - 222
Target Start/End: Original strand, 15044800 - 15044898
Alignment:
Q  124 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 222  Q
    ||||||||||| || || ||||||||||| ||||||||| |||||||||| ||||| ||||||||| ||| ||||||||||||||||||||||| ||||    
T  15044800 accttctcctccttattagattggtcaagggcataattattaacttcaattggacatggcaaataactaagtacaccatccagaagtggttgtatcccc 15044898  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 37 - 127
Target Start/End: Original strand, 15043971 - 15044061
Alignment:
Q  37 cttagatatgttaactgaccaaacttcctttgctccaacttgaaagccaatgctacaaggggcccatcgggacttccagtcagctgaacct 127  Q
    |||| |||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||| | |||| ||||| |||||    
T  15043971 cttaaatatgttagctgaccaaacttactttcctccaacttgaaagccaatgctacaaggggcccatcaggattaccaggcagctcaacct 15044061  T

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Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 224 - 295
Target Start/End: Original strand, 15045570 - 15045641
Alignment:
Q  224 tgtttttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgctccct 295  Q
    ||||||||| ||||||||||||||||||||||||||||||||| || | ||||||||||||||| |||||||    
T  15045570 tgtttttgaaagcactacccatgaataccggtataaatttccgcgccacggtagccctacgaatggctccct 15045641  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 322 - 375
Target Start/End: Original strand, 15047553 - 15047606
Alignment:
Q  322 tcatcgctaagaaacgcttcagcaagtacatcatctacctctgacacaggttct 375  Q
    ||||| |||||||||||||| ||||||| |||||| ||||||||||||| ||||    
T  15047553 tcatcactaagaaacgcttccgcaagtatatcatcaacctctgacacagtttct 15047606  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 39
Target Start/End: Original strand, 15043819 - 15043854
Alignment:
Q  4 aaatcacccttccgaatgacgccctcataaactctt 39  Q
    ||||||||||||||||||||||||||||||| ||||    
T  15043819 aaatcacccttccgaatgacgccctcataaattctt 15043854  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 239 - 290
Target Start/End: Original strand, 44307022 - 44307073
Alignment:
Q  239 tacccatgaataccggtataaatttccgtgctatggtagccctacgaattgc 290  Q
    |||||||||| |  |||| |||||||||||||||||| ||||||||||||||    
T  44307022 tacccatgaaaattggtacaaatttccgtgctatggttgccctacgaattgc 44307073  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 222
Target Start/End: Original strand, 33601026 - 33601124
Alignment:
Q  124 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 222  Q
    ||||| ||||||||||| ||||||   |||||||||||| |  ||||| | ||||| ||||||| | |||  |||||||||| ||||||||||| ||||    
T  33601026 accttttcctcattcttagattggatgagagcataattagttgcttcagttggacacggcaaattattaagcacaccatccaaaagtggttgtagcccc 33601124  T

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