View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13195_high_10 (Length: 311)
Name: NF13195_high_10
Description: NF13195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13195_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 16 - 295
Target Start/End: Original strand, 2450794 - 2451073
Alignment:
| Q |
16 |
attaatgtcggtaaatcaacggctttggtcggggaaagtggttctggaaaatcgacaatcataggactaattgagagattttatgatccaataaaaggga |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2450794 |
attaatgtcggtaaatcaacggctttggtcggggaaagtggttctggaaaatcgacaatcataggactaattgagagattttatgatccaataaaaggga |
2450893 |
T |
|
| Q |
116 |
tagtgacgattgatggtagtgatataaaatcttataatctaaggtcattaaggaagcatatttcacttgtgagtcaagagccaacattgtttggtggtac |
215 |
Q |
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|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2450894 |
tagtgacgattgatggtagtgatataaagtcttataatctaaggtcattaaggaagcatatttcacttgtgagtcaagagccaacattgtttggtggtac |
2450993 |
T |
|
| Q |
216 |
cataagggagaatattgcatatggggcatatgataaggttgatgagagtgagattatagatgcagctaaggctgcaaatg |
295 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2450994 |
cataagggagaatattgcatatggagcatatgataaggttgatgagagtgagattatagatgcagctaaggctgcaaatg |
2451073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 28 - 295
Target Start/End: Original strand, 2440081 - 2440351
Alignment:
| Q |
28 |
aaatcaacggctttggtcggggaaagtggttctggaaaatcgacaatcataggactaattgagagattttatgatccaataaaagggatagtgacgattg |
127 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||| ||| |
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| T |
2440081 |
aaatcaacggctttggttggggaaagtggttctggaaaatcgacaatcataggactaattgagagattctatgatccacttaaagggatagtgacagttg |
2440180 |
T |
|
| Q |
128 |
atggtagtgatataaaatcttataatctaaggtcattaaggaagcatatttcacttgtgagtcaagagccaacattgtttggtggtaccataagggagaa |
227 |
Q |
| |
|
||||||| || |||||| ||||||||||| | ||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||| || || |
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|
| T |
2440181 |
atggtagagacataaaaacttataatctacgatcattaaggaaacatattgcacttgtgagtcaagaaccaacattgtttggtggtaccataagagaaaa |
2440280 |
T |
|
| Q |
228 |
tattgcatatggggcat---atgataaggttgatgagagtgagattatagatgcagctaaggctgcaaatg |
295 |
Q |
| |
|
||||| |||||| |||| ||||||| ||||||||||||||||||||||| ||| | ||||||||||||| |
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|
| T |
2440281 |
tattgtatatggagcatatgatgataaagttgatgagagtgagattatagaggcatcaaaggctgcaaatg |
2440351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 28 - 295
Target Start/End: Complemental strand, 2596802 - 2596532
Alignment:
| Q |
28 |
aaatcaacggctttggtcggggaaagtggttctggaaaatcgacaatcataggactaattgagagattttatgatccaataaaagggatagtgacgattg |
127 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| | |||||||||||||| |||| |
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|
| T |
2596802 |
aaatcgacggctttggtaggggaaagtggttctggaaaatcgacaattataggactaattgagagattctatgatccatttaaagggatagtgacaattg |
2596703 |
T |
|
| Q |
128 |
atggtagtgatataaaatcttataatctaaggtcattaaggaagcatatttcacttgtgagtcaagagccaacattgtttggtggtaccataagggagaa |
227 |
Q |
| |
|
| ||||| || ||||| | ||||||||| | ||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||| || || |
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| T |
2596702 |
acggtagagacataaagacatataatctacgatcattaaggaaacatattgcacttgtgagtcaagaaccaacattgtttggtggtaccataaaagaaaa |
2596603 |
T |
|
| Q |
228 |
tattgcatatggggcat---atgataaggttgatgagagtgagattatagatgcagctaaggctgcaaatg |
295 |
Q |
| |
|
||||| |||||| |||| ||||||| ||||||||||||||||||||||| ||| | ||||||||||||| |
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|
| T |
2596602 |
tattgtatatggagcatatgatgataaagttgatgagagtgagattatagaggcatcaaaggctgcaaatg |
2596532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 28 - 295
Target Start/End: Complemental strand, 2641458 - 2641188
Alignment:
| Q |
28 |
aaatcaacggctttggtcggggaaagtggttctggaaaatcgacaatcataggactaattgagagattttatgatccaataaaagggatagtgacgattg |
127 |
Q |
| |
|
||||| |||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||| |
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|
| T |
2641458 |
aaatcgacggctttggtcggggaaagtggttcagggaaatcaacaatcataggactaattgagagattctatgatccaattaaagggatagtgacaattg |
2641359 |
T |
|
| Q |
128 |
atggtagtgatataaaatcttataatctaaggtcattaaggaagcatatttcacttgtgagtcaagagccaacattgtttggtggtaccataagggagaa |
227 |
Q |
| |
|
||||| |||||||| ||||||||||||||||| |||||||| || ||| ||||||| |||||||| |||||| |||||||||||||||||||||| || |
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|
| T |
2641358 |
atggtgaagatataaagtcttataatctaaggtcgttaaggaaacacattgcacttgtaagtcaagaaccaacactgtttggtggtaccataagggaaaa |
2641259 |
T |
|
| Q |
228 |
tattgcatatggggcat---atgataaggttgatgagagtgagattatagatgcagctaaggctgcaaatg |
295 |
Q |
| |
|
||||||||| || || | ||||||| |||||||||||||||||||| | ||| | ||||||||||||| |
|
|
| T |
2641258 |
tattgcatacggagcctatgatgataaagttgatgagagtgagattattcaggcatcaaaggctgcaaatg |
2641188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 28 - 295
Target Start/End: Complemental strand, 2672618 - 2672348
Alignment:
| Q |
28 |
aaatcaacggctttggtcggggaaagtggttctggaaaatcgacaatcataggactaattgagagattttatgatccaataaaagggatagtgacgattg |
127 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| | |||||||||||||| |||| |
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|
| T |
2672618 |
aaatcaacggctttggtaggggaaagtggttctggaaaatcgacaatcataggactaattgagagattctatgacccacttaaagggatagtgacaattg |
2672519 |
T |
|
| Q |
128 |
atggtagtgatataaaatcttataatctaaggtcattaaggaagcatatttcacttgtgagtcaagagccaacattgtttggtggtaccataagggagaa |
227 |
Q |
| |
|
| ||||| || ||||| | |||||||| |||||||| ||||| || ||| | |||||||||||||| |||||||||||| |||||||||||||||| || |
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|
| T |
2672518 |
acggtagagacataaagacatataatctcaggtcattgaggaaacacattgcccttgtgagtcaagaaccaacattgtttagtggtaccataagggaaaa |
2672419 |
T |
|
| Q |
228 |
tattgcatatggggcat---atgataaggttgatgagagtgagattatagatgcagctaaggctgcaaatg |
295 |
Q |
| |
|
|||||||||||| || | |||||| |||||||||||||||||||||||| ||| | |||||| |||||| |
|
|
| T |
2672418 |
tattgcatatggagcttatgatgatacggttgatgagagtgagattatagaggcatcaaaggcttcaaatg |
2672348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 28 - 292
Target Start/End: Complemental strand, 2569243 - 2568976
Alignment:
| Q |
28 |
aaatcaacggctttggtcggggaaagtggttctggaaaatcgacaatcataggactaattgagagattttatgatccaataaaagggatagtgacgattg |
127 |
Q |
| |
|
||||| || |||||||| ||||||||||||||||||||||| |||||||||||||| ||||| ||||| ||||||||| | |||||||||||||| |||| |
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|
| T |
2569243 |
aaatcgacagctttggtaggggaaagtggttctggaaaatcaacaatcataggacttattgaaagattctatgatccacttaaagggatagtgacaattg |
2569144 |
T |
|
| Q |
128 |
atggtagtgatataaaatcttataatctaaggtcattaaggaagcatatttcacttgtgagtcaagagccaacattgtttggtggtaccataagggagaa |
227 |
Q |
| |
|
||||||| || ||||| | ||||||||||||||||||||| | || ||| |||||||||||||||| |||||||||||| |||||||||||||||| || |
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|
| T |
2569143 |
atggtagagacataaagacatataatctaaggtcattaagggaacacattgcacttgtgagtcaagaaccaacattgtttagtggtaccataagggaaaa |
2569044 |
T |
|
| Q |
228 |
tattgcatatggggcat---atgataaggttgatgagagtgagattatagatgcagctaaggctgcaa |
292 |
Q |
| |
|
|||||||||||| || | |||||||||||||||||||||| |||||||| ||| | |||||||||| |
|
|
| T |
2569043 |
tattgcatatggagcttacgatgataaggttgatgagagtgaaattatagaggcatcaaaggctgcaa |
2568976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 28 - 295
Target Start/End: Original strand, 2623571 - 2623841
Alignment:
| Q |
28 |
aaatcaacggctttggtcggggaaagtggttctggaaaatcgacaatcataggactaattgagagattttatgatccaataaaagggatagtgacgattg |
127 |
Q |
| |
|
||||| || ||| |||| ||| ||||||||||||| ||||| || |||||||||||||||||||| || ||||||||| | ||||||||||||| |||| |
|
|
| T |
2623571 |
aaatcgacagctctggtagggaaaagtggttctgggaaatcaacgatcataggactaattgagaggttctatgatccacttgaagggatagtgacaattg |
2623670 |
T |
|
| Q |
128 |
atggtagtgatataaaatcttataatctaaggtcattaaggaagcatatttcacttgtgagtcaagagccaacattgtttggtggtaccataagggagaa |
227 |
Q |
| |
|
|||| || || |||||| ||||||||||||||||||||||||| || ||| |||||||||||||||| ||||||||||||||||||||||||| || || |
|
|
| T |
2623671 |
atggcagagacataaaaacttataatctaaggtcattaaggaaacacattgcacttgtgagtcaagaaccaacattgtttggtggtaccataaaagaaaa |
2623770 |
T |
|
| Q |
228 |
tattgcatatggggcata---tgataaggttgatgagagtgagattatagatgcagctaaggctgcaaatg |
295 |
Q |
| |
|
|||||||||||| |||| |||| |||||||||||||||| |||||||| ||| | ||||||||||||| |
|
|
| T |
2623771 |
tattgcatatggatcatatggtgatcaggttgatgagagtgaaattatagaggcatcaaaggctgcaaatg |
2623841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 28 - 295
Target Start/End: Original strand, 2592027 - 2592297
Alignment:
| Q |
28 |
aaatcaacggctttggtcggggaaagtggttctggaaaatcgacaatcataggactaattgagagattttatgatccaataaaagggatagtgacgattg |
127 |
Q |
| |
|
|||||||| || ||||| || |||||||||||||| ||||| || |||||||||||||||||||| || ||||||||| | |||||||||||||| |||| |
|
|
| T |
2592027 |
aaatcaacagcgttggtaggagaaagtggttctgggaaatcaacgatcataggactaattgagaggttctatgatccacttaaagggatagtgacaattg |
2592126 |
T |
|
| Q |
128 |
atggtagtgatataaaatcttataatctaaggtcattaaggaagcatatttcacttgtgagtcaagagccaacattgtttggtggtaccataagggagaa |
227 |
Q |
| |
|
||||||| || |||||| |||||||||||||||| ||||||| || ||| |||||||||||||||| |||||||||||| |||||||||| | || || |
|
|
| T |
2592127 |
atggtagggacataaaaatttataatctaaggtcactaaggaaacacattgcacttgtgagtcaagaaccaacattgtttagtggtaccatcaaagaaaa |
2592226 |
T |
|
| Q |
228 |
tattgcatatggggcat---atgataaggttgatgagagtgagattatagatgcagctaaggctgcaaatg |
295 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||| ||||| |||||||| ||| | ||||||||||||| |
|
|
| T |
2592227 |
tattgcatatggatcatatgatgataaggttgatgaaagtgaaattatagaggcatcaaaggctgcaaatg |
2592297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 239
Target Start/End: Complemental strand, 17870657 - 17870446
Alignment:
| Q |
28 |
aaatcaacggctttggtcggggaaagtggttctggaaaatcgacaatcataggactaattgagagattttatgatccaataaaagggatagtgacgattg |
127 |
Q |
| |
|
||||| ||||| || || ||| |||| || ||||| ||||| || ||||||||| |||| |||||||| ||||||||||||||||| | ||||| || | |
|
|
| T |
17870657 |
aaatcgacggcattagtggggcaaagcgggtctggcaaatcaaccatcataggattaatagagagattctatgatccaataaaaggaaatgtgacaatag |
17870558 |
T |
|
| Q |
128 |
atggtagtgatataaaatcttataatctaaggtcattaaggaagcatatttcacttgtgagtcaagagccaacattgtttggtggtaccataagggagaa |
227 |
Q |
| |
|
|||||| | |||||||| ||||| |||| |||| |||| || || || |||||||||| ||||| ||||||||| | ||| |||||||| || || |
|
|
| T |
17870557 |
atggtacaaacataaaatcatataacctaaagtcactaagaaaacacatagcacttgtgagccaagaaccaacattgataaatggaaccataagagacaa |
17870458 |
T |
|
| Q |
228 |
tattgcatatgg |
239 |
Q |
| |
|
||||||||||| |
|
|
| T |
17870457 |
cattgcatatgg |
17870446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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