View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13195_high_2 (Length: 637)

Name: NF13195_high_2
Description: NF13195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13195_high_2
NF13195_high_2
[»] chr5 (5 HSPs)
chr5 (13-398)||(9613191-9613577)
chr5 (181-387)||(14554582-14554790)
chr5 (59-228)||(14554799-14554968)
chr5 (252-398)||(33308842-33308989)
chr5 (343-413)||(22790139-22790209)
[»] chr7 (3 HSPs)
chr7 (13-398)||(3965986-3966372)
chr7 (339-398)||(3209043-3209102)
chr7 (275-312)||(5907967-5908004)
[»] chr1 (6 HSPs)
chr1 (343-618)||(46094292-46094567)
chr1 (50-270)||(46094041-46094261)
chr1 (146-411)||(8968505-8968771)
chr1 (252-398)||(35318442-35318589)
chr1 (209-398)||(45278122-45278312)
chr1 (278-312)||(31416847-31416881)
[»] chr6 (1 HSPs)
chr6 (13-413)||(32953483-32953884)
[»] chr4 (3 HSPs)
chr4 (13-398)||(2539622-2540006)
chr4 (13-165)||(48442962-48443114)
chr4 (355-416)||(27015162-27015223)
[»] scaffold0524 (1 HSPs)
scaffold0524 (13-264)||(468-715)
[»] scaffold0607 (1 HSPs)
scaffold0607 (13-220)||(6754-6961)
[»] chr8 (2 HSPs)
chr8 (176-398)||(19916305-19916528)
chr8 (13-163)||(19915608-19915758)
[»] chr2 (3 HSPs)
chr2 (13-231)||(23776148-23776366)
chr2 (358-415)||(5605131-5605188)
chr2 (280-407)||(19067193-19067320)
[»] scaffold0004 (1 HSPs)
scaffold0004 (13-137)||(212857-212980)
[»] chr3 (4 HSPs)
chr3 (275-413)||(16939778-16939917)
chr3 (209-398)||(30472518-30472708)
chr3 (355-415)||(12530254-12530314)
chr3 (245-398)||(25732919-25733073)
[»] scaffold0381 (1 HSPs)
scaffold0381 (355-416)||(4560-4621)


Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-172; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 13 - 398
Target Start/End: Original strand, 9613191 - 9613577
Alignment:
Q  13 aatataccaaggaagttgagaaatattggataaatgtcgaagtaagttccaagactctcttctcctccctccttctggcataccataaaatccagttagc 112  Q
    |||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |    
T  9613191 aatacaccaaggaagtggagacatattggataaatgtcgaagtaagttccaagactctcttctcctccctccttctggcataccatagaatccagttaac 9613290  T
Q  113 cttcatcttcccttaaaagagtcatttacctctatatcaatatgattttgggagaaattcataatagtacaattaaagttcttattccataaacatgcca 212  Q
    || ||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||  | ||||||||||||||||||||||||| |||||| ||||    
T  9613291 ctccatcttcccttaacagagtcatttacctccatatcaatatgattctgggagaaatttgtgatagtacaattaaagttcttattccgtaaacaagcca 9613390  T
Q  213 aaccacctcccctaccaatacggtcaacagaaaaacagtaatcaaaagccaacatatagttcaattcttcaattttattagacgttgtcattgtttcaga 312  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  9613391 aaccacctcccctaccaatacggtcaacagaaaaacagtaatcgaaagccaacatatatttcaattcttcaattttattagatgttgtcattgtttcaga 9613490  T
Q  313 -aggattattgcatccggtttataggtccggactaggtactttaaattaggaactgtgctcgggctacctaaaccccgacaattcca 398  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  9613491 caggattattgcatccggtttataggtccggactaggtactttaaattaggaactgtgctcgggctacctaaaccccgacagttcca 9613577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 181 - 387
Target Start/End: Complemental strand, 14554790 - 14554582
Alignment:
Q  181 acaattaaagttcttattccataaacatgccaaaccacctcccctaccaatacggtcaacagaaaaa-cagtaatcaaaagccaacatatagttcaattc 279  Q
    |||||||||| |||||||||||||||||  |||||||||||| ||||| ||||  |||||| ||||| ||  ||||||||||||||||||| || || ||    
T  14554790 acaattaaaggtcttattccataaacatatcaaaccacctcctctaccgatacaatcaacaaaaaaaacaagaatcaaaagccaacatatattttaaatc 14554691  T
Q  280 ttcaattttattagacgttgtcattgtttcaga-aggattattgcatccggtttataggtccggactaggtactttaaattaggaactgtgctcgggcta 378  Q
    ||||||||||||||||||| ||||||||| | | | ||||||| |||| | ||||||||||   ||||| ||||||||||| ||||  |||||||| |||    
T  14554690 ttcaattttattagacgttatcattgttttacacacgattattacatctgatttataggtctaaactagatactttaaattgggaatcgtgctcggacta 14554591  T
Q  379 cctaaaccc 387  Q
    |||||||||    
T  14554590 cctaaaccc 14554582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 59 - 228
Target Start/End: Complemental strand, 14554968 - 14554799
Alignment:
Q  59 ttccaagactctcttctcctccctccttctggcataccataaaatccagttagccttcatcttcccttaaaagagtcatttacctctatatcaatatgat 158  Q
    ||||||||  |||||||||| ||||||| |||||||| ||| |||| ||||||||| ||||| ||| | ||||| ||||| ||||| ||||||||| |||    
T  14554968 ttccaagatgctcttctccttcctccttttggcatactatataatcgagttagcctccatctgcccctcaaagaatcattaacctccatatcaataagat 14554869  T
Q  159 tttgggagaaattcataatagtacaattaaagttcttattccataaacatgccaaaccacctcccctacc 228  Q
    ||||| |||||||  | || ||||||||||||||||||||| ||||||||| |||||||||||| |||||    
T  14554868 tttggaagaaatttgtgatggtacaattaaagttcttattctataaacatgtcaaaccacctcctctacc 14554799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 252 - 398
Target Start/End: Original strand, 33308842 - 33308989
Alignment:
Q  252 aatcaaaagccaacatatagttcaattcttcaattttatt-agacgttgtcattgtttcaga-aggattattgcatccggtttataggtccggactaggt 349  Q
    ||||||||| ||| ||||| ||||| |||| ||||||||| ||| | ||||||||||||||| || |  ||  | |||||||| ||||||||||| ||||    
T  33308842 aatcaaaagacaaaatatacttcaaatctttaattttatttaga-gctgtcattgtttcagacagaaaaatcccttccggtttgtaggtccggacaaggt 33308940  T
Q  350 actttaaattaggaactgtgctcgggctacctaaaccccgacaattcca 398  Q
    |||| |  || |||||||| ||||||||||| | ||||||||| |||||    
T  33308941 acttgaggttgggaactgtactcgggctaccaagaccccgacagttcca 33308989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 343 - 413
Target Start/End: Original strand, 22790139 - 22790209
Alignment:
Q  343 actaggtactttaaattaggaactgtgctcgggctacctaaaccccgacaattccaactaatgacactcat 413  Q
    |||||||||||||||| || || ||  |||||||||||||||||||  ||||||||||  || ||||||||    
T  22790139 actaggtactttaaatcagaaattgcactcgggctacctaaacccctgcaattccaaccgataacactcat 22790209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 295; Significance: 1e-165; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 13 - 398
Target Start/End: Original strand, 3965986 - 3966372
Alignment:
Q  13 aatataccaaggaagttgagaaatattggataaatgtcgaagtaagttccaagactctcttctcctccctccttctggcataccataaaatccagttagc 112  Q
    |||| ||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |    
T  3965986 aatacaccaaggaagtggagacatatttgataaatgtcgaagtaagttccaagactctcttctcctccctccttctggcataccatagaatccagttaac 3966085  T
Q  113 cttcatcttcccttaaaagagtcatttacctctatatcaatatgattttgggagaaattcataatagtacaattaaagttcttattccataaacatgcca 212  Q
    || ||||||||| ||| ||||||||||||||| |||||||||||||| |||||||||||  | |||||||||||||||||||||||||||||||| ||||    
T  3966086 ctccatcttcccctaatagagtcatttacctccatatcaatatgattctgggagaaatttgtgatagtacaattaaagttcttattccataaacaagcca 3966185  T
Q  213 aaccacctcccctaccaatacggtcaacagaaaaacagtaatcaaaagccaacatatagttcaattcttcaattttattagacgttgtcattgtttcaga 312  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |    
T  3966186 aaccacctcccctaccaatacggtcaacagaaaaacagtaatcgaaagccaacatatatttcaattcttcaattttattagacgttgtcattgtttcata 3966285  T
Q  313 -aggattattgcatccggtttataggtccggactaggtactttaaattaggaactgtgctcgggctacctaaaccccgacaattcca 398  Q
     | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  3966286 catgattattgcatccggtttataggtcctgactaggtactttaaattaggaactgtgctcgggctacctaaaccccgacagttcca 3966372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 339 - 398
Target Start/End: Original strand, 3209043 - 3209102
Alignment:
Q  339 ccggactaggtactttaaattaggaactgtgctcgggctacctaaaccccgacaattcca 398  Q
    ||||||||||||||| | || ||||| ||||||||||||||||| |||||||||||||||    
T  3209043 ccggactaggtacttaagatcaggaattgtgctcgggctacctataccccgacaattcca 3209102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 275 - 312
Target Start/End: Original strand, 5907967 - 5908004
Alignment:
Q  275 aattcttcaattttattagacgttgtcattgtttcaga 312  Q
    |||||| |||||||||||||||||||||||||||||||    
T  5907967 aattctccaattttattagacgttgtcattgtttcaga 5908004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 343 - 618
Target Start/End: Original strand, 46094292 - 46094567
Alignment:
Q  343 actaggtactttaaattaggaactgtgctcgggctacctaaaccccgacaattccaactaatgacactcatctaacaacccaaccttaatcccggccaaa 442  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46094292 actaggtactttaaattaggaactgtgctcgggctacctaaaccccgacaattccaactaatgacactcatctaacaacccaaccttaatcccggccaaa 46094391  T
Q  443 actataaggattttagaatagtgagaacggcacaacggctgcaacagtgaatgaaaccatggaatcaagaaacccttggaacatatcataaaagacaaaa 542  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  46094392 actataaggattttagaatagtgagaacggcacaacggctgcaacagtgaatgaaaccatggaatcaagaaacccttggagcatatcataaaagacaaaa 46094491  T
Q  543 gtgtgaatttggatatatggaaatcaatgatggcttgatgaaaacaaaggcaggaagcataatcgcatgacacagg 618  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46094492 gtgtgaatttggatatatggaaatcaatgatggcttgatgaaaacaaaggcaggaagcataatcgcatgacacagg 46094567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 50 - 270
Target Start/End: Original strand, 46094041 - 46094261
Alignment:
Q  50 cgaagtaagttccaagactctcttctcctccctccttctggcataccataaaatccagttagccttcatcttcccttaaaagagtcatttacctctatat 149  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||    
T  46094041 cgaagtaagttccaagactctcttctcctccctccttctggcataccataaaatccagttagcctccatcttcccctaaaagagtcatttacctccatat 46094140  T
Q  150 caatatgattttgggagaaattcataatagtacaattaaagttcttattccataaacatgccaaaccacctcccctaccaatacggtcaacagaaaaaca 249  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  46094141 caatatgattttgggagaaattcgtaataatacaattaaagttcttattccataaacatgccaaaccacctcccctaccaatacggtcagcagaaaaaca 46094240  T
Q  250 gtaatcaaaagccaacatata 270  Q
    |||||| ||||||||||||||    
T  46094241 gtaatcgaaagccaacatata 46094261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 146 - 411
Target Start/End: Original strand, 8968505 - 8968771
Alignment:
Q  146 atatcaatatgattttgggagaaattcataatagtacaattaaagttcttattccataaacatgccaaaccacctcccctaccaatacggtcaac--aga 243  Q
    ||||||||||||||||| ||||||||  | | ||||||||| ||   ||| |||||||| || |||||||   ||||||||||||| |  || ||  |||    
T  8968505 atatcaatatgattttgtgagaaattagtgacagtacaatttaaacactttttccataatcaagccaaactttctcccctaccaattctatccaccgaga 8968604  T
Q  244 aaaacagtaatcaaaagccaacatatagttcaattcttcaattttattagacgttgtcattgtttcaga-aggattattgcatccggtttataggtccgg 342  Q
     ||||| |||||||||| ||| ||||| ||||| |||||||||||  |||   |||||||||||| ||| | ||||||| ||| | ||||||| |  |||    
T  8968605 gaaacaataatcaaaagacaaaatatacttcaactcttcaatttt--tagtttttgtcattgtttgagacatgattattccatacagtttatatgatcgg 8968702  T
Q  343 actaggtactttaaattaggaactgtgctcgggctacctaaaccccgacaattccaactaatgacactc 411  Q
    |||||||| || | ||||||||||||||||||||||||| | | |||||| ||||||||||||||||||    
T  8968703 actaggtatttaagattaggaactgtgctcgggctacctgatctccgacatttccaactaatgacactc 8968771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 252 - 398
Target Start/End: Complemental strand, 35318589 - 35318442
Alignment:
Q  252 aatcaaaagccaacatatagttcaattcttcaattttatt-agacgttgtcattgtttcaga-aggattattgcatccggtttataggtccggactaggt 349  Q
    ||||||||| ||| ||||| ||||| |||||||||||||| ||| | ||||||||||||||| || |  ||  | |||||||| ||||||||||| ||||    
T  35318589 aatcaaaagacaaaatatacttcaaatcttcaattttatttaga-gctgtcattgtttcagacagaaaaatcccttccggtttgtaggtccggacaaggt 35318491  T
Q  350 actttaaattaggaactgtgctcgggctacctaaaccccgacaattcca 398  Q
    |||| |  || |||||||| ||||||||||| | ||||||||| |||||    
T  35318490 acttgaggttgggaactgtactcgggctaccaagaccccgacagttcca 35318442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 209 - 398
Target Start/End: Original strand, 45278122 - 45278312
Alignment:
Q  209 gccaaaccacctcccctaccaatacggtcaacagaaaaacagtaatcaaaagccaacatatagttcaattcttcaattttattagacgttgtcattgttt 308  Q
    |||||||| |||||||||||||| |  ||||| | ||| ||  ||||||||| ||  ||||| ||||||||||||||||||||  | | || ||||||||    
T  45278122 gccaaacctcctcccctaccaattctatcaaccgtaaagcaagaatcaaaagacagaatatacttcaattcttcaattttatttaaagctgccattgttt 45278221  T
Q  309 caga-aggattattgcatccggtttataggtccggactaggtactttaaattaggaactgtgctcgggctacctaaaccccgacaattcca 398  Q
    |||| || |  ||| | |||||||| || || ||||| |||||||| | | | |||||||| |||||||| || |  |||||||| |||||    
T  45278222 cagacagaaaaattccttccggtttgtatgttcggaccaggtacttaagagtgggaactgtactcgggctgcccaggccccgacagttcca 45278312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 278 - 312
Target Start/End: Complemental strand, 31416881 - 31416847
Alignment:
Q  278 tcttcaattttattagacgttgtcattgtttcaga 312  Q
    ||||||||||||||||||||||||||| |||||||    
T  31416881 tcttcaattttattagacgttgtcattatttcaga 31416847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 13 - 413
Target Start/End: Complemental strand, 32953884 - 32953483
Alignment:
Q  13 aatataccaaggaagttgagaaatattggataaatgtcgaagtaagttccaagactctcttctcctccctccttctggcataccataaaatccagttagc 112  Q
    |||| |||||||||||||||||| |||||||||||||| |||||| ||||| ||||||||||  || || ||||| ||||||||||| || ||||||| |    
T  32953884 aatacaccaaggaagttgagaaagattggataaatgtctaagtaaattccaggactctcttcgtctaccaccttccggcataccatagaaaccagttaac 32953785  T
Q  113 cttcatcttcccttaaaagagtcatttacctctatatcaatatgattttgggagaaattcataatagtacaattaaagttcttattccataaacatgcca 212  Q
    || ||||| ||| | ||||| ||| | ||||| ||||||||||||||||||||||||||| | ||| |||||| ||| ||||||||||||||||| ||||    
T  32953784 ctccatctacccctcaaagaatcagtaacctccatatcaatatgattttgggagaaattcgtgatattacaatgaaaattcttattccataaacaagcca 32953685  T
Q  213 aaccacctcccctaccaatacggtcaacagaaaaacagtaatcaaaagccaacatatagttcaattcttcaattttattagacgttgtcattgtttcaga 312  Q
    |||| ||||||||||| |||||||  ||||  |||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  32953684 aacctcctcccctaccgatacggtagacagtgaaacagtagtcaaaagccaacatatatttcaaatcttcaattttattagacgttgtcattgtttcaga 32953585  T
Q  313 -aggattattgcatccggtttataggtccggactaggtactttaaattaggaactgtgctcgggctacctaaaccccgacaattccaactaatgacactc 411  Q
     ||||||||||||||||| ||| ||||||| | |||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  32953584 taggattattgcatccggcttaaaggtccgaattaggaactttaaattaggaattgtgctcgggctacctaaacctcgacaattccaactaatgacactc 32953485  T
Q  412 at 413  Q
    ||    
T  32953484 at 32953483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 13 - 398
Target Start/End: Complemental strand, 2540006 - 2539622
Alignment:
Q  13 aatataccaaggaagttgagaaatattggataaatgtcgaagtaagttccaagactctcttctcctccctccttctggcataccataaaatccagttagc 112  Q
    |||| ||||||||||||| |||| |||| |||| ||  ||||||| |||||| ||||||||||||| ||||||||||||||||||||| ||| |||||||    
T  2540006 aatacaccaaggaagttgggaaagattgaataattgaagaagtaaattccaaaactctcttctccttcctccttctggcataccataacatcaagttagc 2539907  T
Q  113 cttcatctt-cccttaaaagagtcatttacctctatatcaatatgattttgggagaaattcataatagtacaattaaagttcttattccataaacatgcc 211  Q
    || ||| || ||| | ||||||||||| ||||| |||||||| |||||||||||||||||| |||||||| ||||||| ||||||||||||||||| |||    
T  2539906 ctccatattgcccctcaaagagtcattaacctccatatcaatgtgattttgggagaaattcgtaatagtataattaaaattcttattccataaacaagcc 2539807  T
Q  212 aaaccacctcccctaccaatacggtcaacagaaaaacagtaatcaaaagccaacatatagttcaattcttcaattttattagacgttgtcattgtttcag 311  Q
    ||||||||||| ||||||| |||||||||||| ||||||||   ||||||||||||||| || |||||||||||||||||||||||||| ||||||||||    
T  2539806 aaaccacctcctctaccaacacggtcaacagataaacagta---aaaagccaacatatatttaaattcttcaattttattagacgttgttattgtttcag 2539710  T
Q  312 aagg-attattgcatccggtttataggtccggactaggtactttaaattaggaactgtgctcgggctacctaaaccccgacaattcca 398  Q
      || ||||||||||||| |||||||||||||||||||||||||| ||| | || ||||||||||||||||||||||||||| |||||    
T  2539709 gcggaattattgcatccgatttataggtccggactaggtactttacattggaaattgtgctcgggctacctaaaccccgacagttcca 2539622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 13 - 165
Target Start/End: Complemental strand, 48443114 - 48442962
Alignment:
Q  13 aatataccaaggaagttgagaaatattggataaatgtcgaagtaagttccaagactctcttctcctccctccttctggcataccataaaatccagttagc 112  Q
    |||| |||||||||| || |||| ||||||||||||||||||||| |||||||||||||| | ||| |||||||| |||||||||||||| ||||||| |    
T  48443114 aatacaccaaggaagctgggaaagattggataaatgtcgaagtaaattccaagactctctccgccttcctccttccggcataccataaaaaccagttaac 48443015  T
Q  113 cttcatcttcccttaaaagagtcatttacctctatatcaatatgattttggga 165  Q
    |  | | | ||| | ||||| ||||| | ||| | ||||||||||||||||||    
T  48443014 caccgtatccccctcaaagaatcattaaactccacatcaatatgattttggga 48442962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 355 - 416
Target Start/End: Original strand, 27015162 - 27015223
Alignment:
Q  355 aaattaggaactgtgctcgggctacctaaaccccgacaattccaactaatgacactcatcta 416  Q
    |||| |||||||| ||||||||| ||||| ||||| || ||||||||||| |||||||||||    
T  27015162 aaatcaggaactgcgctcgggctgcctaatccccggcagttccaactaataacactcatcta 27015223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0524 (Bit Score: 177; Significance: 4e-95; HSPs: 1)
Name: scaffold0524
Description:

Target: scaffold0524; HSP #1
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 13 - 264
Target Start/End: Original strand, 468 - 715
Alignment:
Q  13 aatataccaaggaagttgagaaatattggataaatgtcgaagtaagttccaagactctcttctcctccctccttctggcataccataaaatccagttagc 112  Q
    |||| |||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  468 aatacaccaaggaggttgaaaaatattggataaatgccgaagtaagttccaagactctcttctcctccctccttctggcataccataaaatccagttagc 567  T
Q  113 cttcatcttcccttaaaagagtcatttacctctatatcaatatgattttgggagaaattcataatagtacaattaaagttcttattccataaacatgcca 212  Q
    |||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  568 cttcatcttcccctcaaagagtcatttacctccatatcaatatgattttgggagaaattcatgatagtgcaattaaagttcttattccataaacatgcca 667  T
Q  213 aaccacctcccctaccaatacggt-caacagaaaaacagtaatcaaaagccaa 264  Q
    |||||     ||||||||||||||  || | ||||||||||||||||||||||    
T  668 aacca-----cctaccaatacggtaaaaaaaaaaaacagtaatcaaaagccaa 715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0607 (Bit Score: 172; Significance: 4e-92; HSPs: 1)
Name: scaffold0607
Description:

Target: scaffold0607; HSP #1
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 13 - 220
Target Start/End: Complemental strand, 6961 - 6754
Alignment:
Q  13 aatataccaaggaagttgagaaatattggataaatgtcgaagtaagttccaagactctcttctcctccctccttctggcataccataaaatccagttagc 112  Q
    |||| |||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6961 aatacaccaaggaggttgaaaaatattggataaatgccgaagtaagttccaagactctcttctcctccctccttctggcataccataaaatccagttagc 6862  T
Q  113 cttcatcttcccttaaaagagtcatttacctctatatcaatatgattttgggagaaattcataatagtacaattaaagttcttattccataaacatgcca 212  Q
    |||||||||||| | |||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  6861 cttcatcttcccctcaaagagtcatttacctccgtatcaatatgattttgggagaaattcatgatagtacaattaaagttcttattccataaacatgcca 6762  T
Q  213 aaccacct 220  Q
    ||||||||    
T  6761 aaccacct 6754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 144; Significance: 2e-75; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 176 - 398
Target Start/End: Original strand, 19916305 - 19916528
Alignment:
Q  176 atagtacaattaaagttcttattccataaacatgccaaaccacctcccctaccaatacggtcaacagaaaaacagtaatcaaaagccaacatatagttca 275  Q
    |||||||||| ||| ||||||||||||||||| | |||||||||||||||||| ||| ||| ||||||||||||||||| ||||| ||||||||| ||||    
T  19916305 atagtacaatcaaaattcttattccataaacaagtcaaaccacctcccctacccataaggttaacagaaaaacagtaataaaaagtcaacatatatttca 19916404  T
Q  276 attcttcaattttattagacgttgtcattgtttcaga-aggattattgcatccggtttataggtccggactaggtactttaaattaggaactgtgctcgg 374  Q
    ||||||||||||||||||||| |||| |||||| ||| | ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  19916405 attcttcaattttattagacgctgtcgttgttttagacaagattattgcatccggtttataggtctggattaggtactttaaattaggaactgtgctcgg 19916504  T
Q  375 gctacctaaaccccgacaattcca 398  Q
    || ||||||||||||||| |||||    
T  19916505 gcaacctaaaccccgacagttcca 19916528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 13 - 163
Target Start/End: Original strand, 19915608 - 19915758
Alignment:
Q  13 aatataccaaggaagttgagaaatatt-ggataaatgtcgaagtaagttccaagactctcttctcctccctccttctggcataccataaaatccagttag 111  Q
    |||| |||||||||||||||||| ||| |||||| || |||||||| ||||| |||||||||||||| ||   || |||||||||||| || ||||| |     
T  19915608 aatacaccaaggaagttgagaaagatttggataactgccgaagtaaattccaggactctcttctccttccatttt-tggcataccatagaaaccagtcaa 19915706  T
Q  112 ccttcatcttcccttaaaagagtcatttacctctatatcaatatgattttgg 163  Q
    ||| ||||||||  | ||||||||||| ||||| |||||||||| |||||||    
T  19915707 cctccatcttcctctcaaagagtcattaacctccatatcaatataattttgg 19915758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 9e-44; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 13 - 231
Target Start/End: Original strand, 23776148 - 23776366
Alignment:
Q  13 aatataccaaggaagttgagaaatattggataaatgtcgaagtaagttccaagactctcttctcctccctccttctggcataccataaaatccagttagc 112  Q
    |||| |||||||||| || |||| |||||||| |||||||||||| ||||||||||| || |  || |||||||| |||||||||||||| ||||||| |    
T  23776148 aatacaccaaggaagctgggaaagattggatatatgtcgaagtaaattccaagactccctccctcttcctccttccggcataccataaaaaccagttaac 23776247  T
Q  113 cttcatcttcccttaaaagagtcatttacctctatatcaatatgattttgggagaaattcataatagtacaattaaagttcttattccataaacatgcca 212  Q
    || ||||||||| | ||||| ||||| || || | |||||||||||||||||| || ||  | ||||  |||||||| ||||||||||||||||| ||||    
T  23776248 ctccatcttcccctcaaagaatcattaacatccacatcaatatgattttgggaaaagtttgtgatagagcaattaaaattcttattccataaacaagcca 23776347  T
Q  213 aaccacctcccctaccaat 231  Q
    |||| ||||||||||||||    
T  23776348 aacctcctcccctaccaat 23776366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 358 - 415
Target Start/End: Original strand, 5605131 - 5605188
Alignment:
Q  358 ttaggaactgtgctcgggctacctaaaccccgacaattccaactaatgacactcatct 415  Q
    ||||||||||  |||||||| |||||||||||||| ||| ||||||||||||||||||    
T  5605131 ttaggaactgcactcgggctccctaaaccccgacagttcaaactaatgacactcatct 5605188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 280 - 407
Target Start/End: Complemental strand, 19067320 - 19067193
Alignment:
Q  280 ttcaattttattagacgttgtcattgtttcaga-aggattattgcatccggtttataggtccggactaggtactttaaattaggaactgtgctcgggcta 378  Q
    |||||||||||| | |||||||||| ||||||| ||||||||| | || |||||||| |  ||||||||||| || | |||||||||  ||||||| ||     
T  19067320 ttcaattttatttgccgttgtcattttttcagacaggattattccttctggtttatatgatcggactaggtatttaagattaggaacaatgctcggactg 19067221  T
Q  379 cctaaaccccgacaattccaactaatgac 407  Q
    |||||| ||  |||||||||||| |||||    
T  19067220 cctaaa-ccgaacaattccaacttatgac 19067193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 13 - 137
Target Start/End: Complemental strand, 212980 - 212857
Alignment:
Q  13 aatataccaaggaagttgagaaatattggataaatgtcgaagtaagttccaagactctcttctcctccctccttctggcataccataaaatccagttagc 112  Q
    |||| |||||||||| ||||||| ||||||||||||||||||||| |||||||||||||| |  ||||||||||| |||||||||||||||||||||| |    
T  212980 aatacaccaaggaagctgagaaagattggataaatgtcgaagtaaattccaagactctctccgtctccctccttc-ggcataccataaaatccagttaac 212882  T
Q  113 cttcatcttcccttaaaagagtcat 137  Q
    || ||||||||| | ||||| ||||    
T  212881 ctccatcttcccctcaaagaatcat 212857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 7e-23; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 275 - 413
Target Start/End: Original strand, 16939778 - 16939917
Alignment:
Q  275 aattcttcaattttattagacgttgtcattgtttcaga-aggattattgcatccggtttataggtccggactaggtactttaaattaggaactgtgctcg 373  Q
    |||||||||||||||||  | | || |||||||||||| || |  |||||||| |||||||| |||||||| ||||| || | |||||||||||| ||||    
T  16939778 aattcttcaattttatttaaagctgccattgtttcagacagaaaaattgcatctggtttataagtccggacgaggtatttgagattaggaactgtactcg 16939877  T
Q  374 ggctacctaaaccccgacaattccaactaatgacactcat 413  Q
    ||||||||||||||| ||| |||||||| |||| ||||||    
T  16939878 ggctacctaaacccctacagttccaactgatgaaactcat 16939917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 209 - 398
Target Start/End: Original strand, 30472518 - 30472708
Alignment:
Q  209 gccaaaccacctcccctaccaatacggtcaacagaaaaacagtaatcaaaagccaacatatagttcaattcttcaattttattagacgttgtcattgttt 308  Q
    |||||||| |||||||||||||| |  ||||| | ||| ||  ||||||||| ||  ||||| ||||||||||||||||||||  | | || ||||||||    
T  30472518 gccaaacctcctcccctaccaattctatcaaccgtaaagcaagaatcaaaagacagaatatacttcaattcttcaattttatttaaagctgccattgttt 30472617  T
Q  309 caga-aggattattgcatccggtttataggtccggactaggtactttaaattaggaactgtgctcgggctacctaaaccccgacaattcca 398  Q
    |||| || |  ||| | |||||||| || || ||||| |||||||| | | | |||||||| |||||||| || |  |||||||| |||||    
T  30472618 cagacagaaaaattccttccggtttgtatgttcggaccaggtacttaagagtgggaactgtactcgggctgcccaggccccgacagttcca 30472708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 355 - 415
Target Start/End: Original strand, 12530254 - 12530314
Alignment:
Q  355 aaattaggaactgtgctcgggctacctaaaccccgacaattccaactaatgacactcatct 415  Q
    |||| |||||||| ||||||||| ||||| ||||| || ||||||||||| ||||||||||    
T  12530254 aaatcaggaactgcgctcgggcttcctaatccccggcagttccaactaataacactcatct 12530314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 245 - 398
Target Start/End: Complemental strand, 25733073 - 25732919
Alignment:
Q  245 aaacagtaatcaaaagccaacatatagttcaattcttcaattttattagacgttgtcattgtttcaga-aggattattgcatccggtttataggtccgga 343  Q
    |||||| ||||||||| ||| | |||  | |||||||||||||||||  | | || |||||||||||| || |  ||| | ||| ||||||| |||| ||    
T  25733073 aaacaggaatcaaaagacaagagatacattaattcttcaattttatttaaggctgccattgtttcagacagaaaaattccttccagtttatatgtccaga 25732974  T
Q  344 ctaggtactttaaattaggaactgtgctcgggctacctaaaccccgacaattcca 398  Q
    | |||||||| | | | |||||| |||||||||| |||| ||||||||| |||||    
T  25732973 caaggtacttaagagtcggaactatgctcgggcttcctagaccccgacagttcca 25732919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 355 - 416
Target Start/End: Complemental strand, 4621 - 4560
Alignment:
Q  355 aaattaggaactgtgctcgggctacctaaaccccgacaattccaactaatgacactcatcta 416  Q
    |||| |||||||| ||||||||| ||||| ||||| || ||||||||||| |||||||||||    
T  4621 aaatcaggaactgcgctcgggctgcctaatccccggcagttccaactaataacactcatcta 4560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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