View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13195_high_7 (Length: 357)

Name: NF13195_high_7
Description: NF13195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13195_high_7
NF13195_high_7
[»] chr1 (3 HSPs)
chr1 (18-344)||(31127640-31127966)
chr1 (50-349)||(31078317-31078616)
chr1 (50-344)||(31132348-31132645)
[»] chr7 (2 HSPs)
chr7 (164-255)||(38642947-38643038)
chr7 (164-255)||(38655855-38655946)


Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 18 - 344
Target Start/End: Complemental strand, 31127966 - 31127640
Alignment:
Q  18 ataaaataagatttcattcatttgtgctgccacgcttctcaatctttaccgggaagccacctttcattatcgaagtaaggtgtgcagcgaactctggctc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  31127966 ataaaataagatttcattcatttgtgctgccacgcttctcaatctttaccaggaagccacctttcattatcgaagtaaggtgtgcagcgaactccggctc 31127867  T
Q  118 aacccctttatccattgcaggaaccaccctaaactgcctcatgatcccagcaaccacccttttcatctgcaagaacgccatttcctttcccaaacacacc 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  31127866 aacccctttatccattgcaggaaccaccctaaactgcctcatgatcccggcaaccacccttttcatctgcaagaacgccatttcctttcctaaacacacc 31127767  T
Q  218 cttggcccagcctgaaaaaccgcataactataaggatccatcccaataaagctccactttccatcatcaacttggctcaaccatctctcaggtcgaaact 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  31127766 cttggcccagcctgaaaaaccgcataactataaggatccatcccaataaagctccactttccatcatcaacttgactcaaccatctctcaggtcgaaact 31127667  T
Q  318 cagcccaatcgggtccccatattttct 344  Q
    |||||||||||||||||||||||||||    
T  31127666 cagcccaatcgggtccccatattttct 31127640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 50 - 349
Target Start/End: Complemental strand, 31078616 - 31078317
Alignment:
Q  50 cgcttctcaatctttaccgggaagccacctttcattatcgaagtaaggtgtgcagcgaactctggctcaacccctttatccattgcaggaaccaccctaa 149  Q
    |||||||||||  |||||| ||||||||||||||| |  || ||||||||||||  | |||| |||||||||||||||||||||||||||||||||||||    
T  31078616 cgcttctcaattcttaccgagaagccacctttcatcaatgaggtaaggtgtgcaatgtactccggctcaacccctttatccattgcaggaaccaccctaa 31078517  T
Q  150 actgcctcatgatcccagcaaccacccttttcatctgcaagaacgccatttcctttcccaaacacacccttggcccagcctgaaaaaccgcataactata 249  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||    
T  31078516 actgcctcatgatccctgcaaccaccctcttcatctgcaagaacgccatttcctttcctaaacacaccctcggcccagcttgaaaaaccgcataactata 31078417  T
Q  250 aggatccatcccaataaagctccactttccatcatcaacttggctcaaccatctctcaggtcgaaactcagcccaatcgggtccccatattttcttcgac 349  Q
    |||||||||||||||||| |||||||| ||||| ||| |||| |||||||| ||||| ||||||||||||||||||||  ||||||||||||||| ||||    
T  31078416 aggatccatcccaataaaactccacttcccatcctcatcttgactcaaccacctctccggtcgaaactcagcccaatcaagtccccatattttctccgac 31078317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 50 - 344
Target Start/End: Complemental strand, 31132645 - 31132348
Alignment:
Q  50 cgcttctcaatctttaccgggaagccacctttcattatcgaagtaaggtgtgcagcgaactctggctcaacccctttatccattgcaggaaccaccctaa 149  Q
    |||||||  ||||||||||| |||||||||||||| || |||||||| |||| | | ||| |||| |||||||||| |||||| || |||| || |||||    
T  31132645 cgcttcttgatctttaccggaaagccacctttcataattgaagtaagatgtgaatcaaacactggttcaaccccttcatccatcgctggaagcaacctaa 31132546  T
Q  150 actgcctcatgatcccagcaaccaccctt---ttcatctgcaagaacgccatttcctttcccaaacacacccttggcccagcctgaaaaaccgcataact 246  Q
    ||| ||| || || ||| |||||| |||    ||||| |  |||||||||||||| || || ||||||||||| |||||||| ||||||| || |||| |    
T  31132545 actcccttataatgccaacaaccaacctgatcttcatttctaagaacgccatttctttccctaaacacaccctcggcccagcttgaaaaatcggataagt 31132446  T
Q  247 ataaggatccatcccaataaagctccactttccatcatcaacttggctcaaccatctctcaggtcgaaactcagcccaatcgggtccccatattttct 344  Q
    ||||||||||||||||| ||||||||| |||||||| ||| || | |||||||| |||||||||| ||||||||||||||||| ||||||||||||||    
T  31132445 ataaggatccatcccaacaaagctccattttccatcgtcagctcgactcaaccacctctcaggtcaaaactcagcccaatcggatccccatattttct 31132348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 255
Target Start/End: Complemental strand, 38643038 - 38642947
Alignment:
Q  164 ccagcaaccacccttttcatctgcaagaacgccatttcctttcccaaacacacccttggcccagcctgaaaaaccgcataactataaggatc 255  Q
    |||||||| | ||||||||| ||||  || |||||||| || |||||||| | ||| ||||||||||||||||||| |||| || |||||||    
T  38643038 ccagcaacaatccttttcatttgcataaatgccatttctttccccaaacaaatcctcggcccagcctgaaaaaccggataagtaaaaggatc 38642947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 255
Target Start/End: Complemental strand, 38655946 - 38655855
Alignment:
Q  164 ccagcaaccacccttttcatctgcaagaacgccatttcctttcccaaacacacccttggcccagcctgaaaaaccgcataactataaggatc 255  Q
    |||||||| | ||||||||| ||||  || |||||||| || |||||||| | ||| ||||||||||||||||||| |||| || |||||||    
T  38655946 ccagcaacaatccttttcatttgcataaatgccatttctttccccaaacaaatcctcggcccagcctgaaaaaccggataagtaaaaggatc 38655855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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