View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13195_high_8 (Length: 320)
Name: NF13195_high_8
Description: NF13195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13195_high_8 |
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| [»] scaffold0147 (1 HSPs) |
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Alignment Details
Target: scaffold0147 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 13 - 296
Target Start/End: Original strand, 10006 - 10289
Alignment:
| Q |
13 |
aggtgcttgaagtttgtggaaatgataatctagatgcaaatatacttagaagcatgaaaacggtacgttttacaccaaatttaaatgtttctatgaaaaa |
112 |
Q |
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| T |
10006 |
aggtgcttgaagtttgtggaaatgataatctagatgcaaatatacttagaagcatgaaaacggtacgttttacaccaaatctaaatgtttctatgaaaaa |
10105 |
T |
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| Q |
113 |
ttaaatccattgtccttcagattgatcatatcgatcttagatttcagcatggcgagggaaatccatttaagaannnnnnnnattggaaacaatgtgtaaa |
212 |
Q |
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| T |
10106 |
ttaaatctattgtccttcagattgatcatatcgatcttagatttcagcatggcgagggaaatccatttaagaattttttttattggaaacaatatgtaaa |
10205 |
T |
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| Q |
213 |
taacatatattgaattccatcttgtctatgtgtaagaggggacaaagacatattcatcatgtcattttagatattcttatgcat |
296 |
Q |
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| T |
10206 |
taacatatattgaattccatcttgtctatgtgtaagaggggacaaagacatattcatcatgtcattttagatattcttatgcat |
10289 |
T |
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Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 19207700 - 19207781
Alignment:
| Q |
13 |
aggtgcttgaagtttgtggaaatgataatctagatgcaaatatacttagaagcatgaaaacggtacgttttacaccaaattt |
94 |
Q |
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| T |
19207700 |
aggtgcttgaagtatgcggaaatggtaatccagatgcaagtatacttagaaccatgaaaacggtatgttttacaccaaattt |
19207781 |
T |
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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 103
Target Start/End: Original strand, 25197302 - 25197392
Alignment:
| Q |
13 |
aggtgcttgaagtttgtggaaatgataatctagatgcaaatatacttagaagcatgaaaacggtacgttttacaccaaatttaaatgtttc |
103 |
Q |
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| T |
25197302 |
aggtacttgaagtttgtcgagacggtaatctagatgcaagtaaccttagaaaaatgaaaacggtatgttttacaccaaaattacatgtttc |
25197392 |
T |
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