View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13195_high_9 (Length: 318)

Name: NF13195_high_9
Description: NF13195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13195_high_9
NF13195_high_9
[»] chr1 (10 HSPs)
chr1 (48-301)||(46056689-46056942)
chr1 (127-178)||(44595718-44595769)
chr1 (100-177)||(34710905-34710982)
chr1 (129-178)||(36313620-36313669)
chr1 (206-298)||(39275820-39275912)
chr1 (111-170)||(43949159-43949218)
chr1 (215-297)||(34710989-34711071)
chr1 (52-87)||(13589676-13589712)
chr1 (254-298)||(13771257-13771300)
chr1 (270-302)||(50746011-50746043)
[»] chr5 (12 HSPs)
chr5 (215-297)||(30721368-30721450)
chr5 (52-88)||(12441329-12441365)
chr5 (113-188)||(25693707-25693782)
chr5 (215-297)||(30685546-30685628)
chr5 (206-272)||(33208414-33208480)
chr5 (47-84)||(9665560-9665597)
chr5 (245-298)||(10020695-10020748)
chr5 (268-300)||(3557870-3557902)
chr5 (270-302)||(13789904-13789936)
chr5 (52-87)||(22428934-22428970)
chr5 (245-301)||(25983028-25983084)
chr5 (52-91)||(34577181-34577221)
[»] chr4 (20 HSPs)
chr4 (206-300)||(38354252-38354346)
chr4 (206-297)||(9319862-9319953)
chr4 (223-302)||(45088297-45088376)
chr4 (206-297)||(50328440-50328531)
chr4 (111-188)||(37056237-37056314)
chr4 (245-298)||(53133449-53133502)
chr4 (111-188)||(55322945-55323022)
chr4 (242-298)||(46393124-46393180)
chr4 (259-297)||(2548976-2549014)
chr4 (224-298)||(2554171-2554245)
chr4 (129-187)||(26740820-26740878)
chr4 (251-301)||(43732047-43732097)
chr4 (206-296)||(55323009-55323099)
chr4 (101-178)||(8171114-8171191)
chr4 (100-177)||(46393214-46393291)
chr4 (52-87)||(3930497-3930533)
chr4 (112-188)||(41236021-41236097)
chr4 (215-295)||(42674003-42674083)
chr4 (114-158)||(48622251-48622295)
chr4 (206-298)||(49250107-49250199)
[»] chr3 (10 HSPs)
chr3 (110-188)||(30732837-30732915)
chr3 (126-188)||(28392157-28392219)
chr3 (111-178)||(28554223-28554290)
chr3 (104-170)||(53287482-53287548)
chr3 (261-302)||(53683917-53683958)
chr3 (261-298)||(54362014-54362051)
chr3 (215-298)||(28554134-28554218)
chr3 (104-176)||(42791058-42791129)
chr3 (52-87)||(47871139-47871175)
chr3 (246-298)||(53287385-53287437)
[»] chr6 (7 HSPs)
chr6 (206-297)||(30323108-30323199)
chr6 (115-188)||(4844465-4844538)
chr6 (100-167)||(2359732-2359799)
chr6 (215-298)||(31038233-31038316)
chr6 (104-169)||(11842261-11842326)
chr6 (52-88)||(30388061-30388098)
chr6 (52-87)||(10039676-10039712)
[»] chr7 (11 HSPs)
chr7 (211-297)||(25971417-25971503)
chr7 (111-188)||(36827812-36827889)
chr7 (112-188)||(23358504-23358580)
chr7 (211-298)||(48046952-48047039)
chr7 (100-170)||(3622278-3622348)
chr7 (52-97)||(35079950-35079996)
chr7 (268-298)||(38318951-38318981)
chr7 (104-178)||(42306267-42306341)
chr7 (52-88)||(23686420-23686457)
chr7 (111-188)||(40019762-40019839)
chr7 (215-298)||(23358424-23358508)
[»] chr2 (8 HSPs)
chr2 (215-297)||(31663473-31663555)
chr2 (111-188)||(44966026-44966103)
chr2 (206-298)||(44966090-44966182)
chr2 (47-89)||(17345731-17345773)
chr2 (246-295)||(6461348-6461397)
chr2 (234-291)||(11617361-11617418)
chr2 (52-88)||(40221312-40221349)
chr2 (218-298)||(34242357-34242437)
[»] chr8 (14 HSPs)
chr8 (111-188)||(40740744-40740821)
chr8 (130-188)||(36434723-36434781)
chr8 (105-177)||(3727138-3727210)
chr8 (112-188)||(19174121-19174197)
chr8 (247-298)||(10361235-10361286)
chr8 (268-302)||(33274366-33274400)
chr8 (268-302)||(34702668-34702702)
chr8 (268-298)||(38666347-38666377)
chr8 (111-188)||(4993235-4993312)
chr8 (52-85)||(23123534-23123567)
chr8 (112-188)||(30203408-30203484)
chr8 (242-286)||(32062259-32062303)
chr8 (129-177)||(32062337-32062385)
chr8 (52-88)||(34313764-34313800)
[»] scaffold0050 (1 HSPs)
scaffold0050 (111-178)||(37258-37324)
[»] scaffold0319 (1 HSPs)
scaffold0319 (52-91)||(6714-6754)
[»] scaffold0047 (2 HSPs)
scaffold0047 (206-298)||(66116-66208)
scaffold0047 (128-188)||(66195-66255)
[»] scaffold0015 (1 HSPs)
scaffold0015 (47-88)||(17168-17210)
[»] scaffold0006 (1 HSPs)
scaffold0006 (104-158)||(50598-50652)


Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 48 - 301
Target Start/End: Complemental strand, 46056942 - 46056689
Alignment:
Q  48 gcaaaattagcaaaagatagggggaaagtgcaattaagccataagtaaatgggtgtccttaaagcacatgttaaaaatcctaaaagaagaagtattcttt 147  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  46056942 gcaaaattagcaaaagatagggggaaagtgcaattaagctataagtaaataggtgtccttaaagcacatgttaaaaatcctaaaagaagaagtattcttt 46056843  T
Q  148 aaaattttgtgatttcaattcatcaaaaagtgaaatattaattatttcttttaaggataagtgaaatattaaatataatgcatgcatttcaatcaactat 247  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  46056842 aaaattttgtgatttcaattcattaaaaagtgaaatattaatttttttttttaaggaaaagtgaaatattaaatataatgcatgcattccaatcaactat 46056743  T
Q  248 ttatatatttaattcattagcttgtgccttaaggacacaagttaacatttctct 301  Q
    |||||| |||||||||||||||| |||||||| |||||||||||||||||||||    
T  46056742 ttatatttttaattcattagcttatgccttaaagacacaagttaacatttctct 46056689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 178
Target Start/End: Original strand, 44595718 - 44595769
Alignment:
Q  127 ctaaaagaagaagtattctttaaaattttgtgatttcaattcatcaaaaagt 178  Q
    |||||||||||| |||||||||||||||||||  |||||||||| |||||||    
T  44595718 ctaaaagaagaaatattctttaaaattttgtgcattcaattcattaaaaagt 44595769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 177
Target Start/End: Original strand, 34710905 - 34710982
Alignment:
Q  100 gtgtccttaaagcacatgttaaaaatcctaaaagaagaagtattctttaaaattttgtgatttcaattcatcaaaaag 177  Q
    |||||||||  | ||||||||| ||||||||||||||||||||| | ||||||| ||||  ||||| |||| ||||||    
T  34710905 gtgtccttagggtacatgttaagaatcctaaaagaagaagtattttataaaattgtgtgcattcaactcattaaaaag 34710982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 129 - 178
Target Start/End: Complemental strand, 36313669 - 36313620
Alignment:
Q  129 aaaagaagaagtattctttaaaattttgtgatttcaattcatcaaaaagt 178  Q
    |||||||||| |||| ||||||||||||||| |||||||||| |||||||    
T  36313669 aaaagaagaaatattttttaaaattttgtgaattcaattcattaaaaagt 36313620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 298
Target Start/End: Complemental strand, 39275912 - 39275820
Alignment:
Q  206 aagtgaaatattaaatataatgcatgcatttcaatcaactatttatatatttaattcattagcttgtgccttaaggacacaagttaacatttc 298  Q
    |||| ||| |||||||| ||||||  ||||||||| |  ||||||||| ||| | |||||| ||||||| |||||  ||||||||||||||||    
T  39275912 aagttaaagattaaataaaatgcacacatttcaataatttatttatatgtttgaatcattaacttgtgctttaagcgcacaagttaacatttc 39275820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 111 - 170
Target Start/End: Complemental strand, 43949218 - 43949159
Alignment:
Q  111 gcacatgttaaaaatcctaaaagaagaagtattctttaaaattttgtgatttcaattcat 170  Q
    ||||||||||| || || |||||||||| |||||| ||||||||||||  ||||||||||    
T  43949218 gcacatgttaagaaacccaaaagaagaaatattctctaaaattttgtgcattcaattcat 43949159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 297
Target Start/End: Original strand, 34710989 - 34711071
Alignment:
Q  215 attaaatataatgcatgcatttcaatcaactatttatatatttaattcattagcttgtgccttaaggacacaagttaacattt 297  Q
    ||||||| |||| ||  ||||||||| | |||||| |||||||  ||||||| |||||| | ||||| |||||||||||||||    
T  34710989 attaaatgtaatacacacatttcaatgagctatttctatatttgtttcattaacttgtgtcataagggcacaagttaacattt 34711071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 87
Target Start/End: Original strand, 13589676 - 13589712
Alignment:
Q  52 aattagcaaaagataggggg-aaagtgcaattaagcc 87  Q
    |||||||||||||||||||| ||||||||||||||||    
T  13589676 aattagcaaaagatagggggaaaagtgcaattaagcc 13589712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 298
Target Start/End: Original strand, 13771257 - 13771300
Alignment:
Q  254 atttaattcattagcttgtgccttaaggacacaagttaacatttc 298  Q
    |||||| |||||| |||||||||||||| ||||||||||||||||    
T  13771257 atttaactcattaacttgtgccttaagg-cacaagttaacatttc 13771300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 270 - 302
Target Start/End: Complemental strand, 50746043 - 50746011
Alignment:
Q  270 tgtgccttaaggacacaagttaacatttctctt 302  Q
    |||||||||||||||||||||||||||| ||||    
T  50746043 tgtgccttaaggacacaagttaacatttttctt 50746011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 215 - 297
Target Start/End: Complemental strand, 30721450 - 30721368
Alignment:
Q  215 attaaatataatgcatgcatttcaatcaactatttatatatttaattcattagcttgtgccttaaggacacaagttaacattt 297  Q
    ||||||| |||||||  ||||||||| |||||||| |||||||  |||||||| ||||||||||| |||||||||||||||||    
T  30721450 attaaatgtaatgcacacatttcaataaactatttctatatttgtttcattagtttgtgccttaaagacacaagttaacattt 30721368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 12441329 - 12441365
Alignment:
Q  52 aattagcaaaagatagggggaaagtgcaattaagcca 88  Q
    ||||||||||||||||||| |||||||||||||||||    
T  12441329 aattagcaaaagataggggaaaagtgcaattaagcca 12441365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 113 - 188
Target Start/End: Complemental strand, 25693782 - 25693707
Alignment:
Q  113 acatgttaaaaatcctaaaagaagaagtattctttaaaattttgtgatttcaattcatcaaaaagtgaaatattaa 188  Q
    ||||||||| ||  |||||||||||  |||||||| ||||||||||| ||||||| || ||||||| ||| |||||    
T  25693782 acatgttaagaaaactaaaagaagagatattcttttaaattttgtgaattcaatttattaaaaagttaaagattaa 25693707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 297
Target Start/End: Complemental strand, 30685628 - 30685546
Alignment:
Q  215 attaaatataatgcatgcatttcaatcaactatttatatatttaattcattagcttgtgccttaaggacacaagttaacattt 297  Q
    ||||||| |||||||   |||||||| |||||||| |||||||  |||||||| || || ||||||  |||||||||||||||    
T  30685628 attaaatgtaatgcacatatttcaataaactatttctatatttgtttcattagtttatgtcttaagagcacaagttaacattt 30685546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 272
Target Start/End: Complemental strand, 33208480 - 33208414
Alignment:
Q  206 aagtgaaatattaaatataatgcatgcatttcaatcaactatttatatatttaattcattagcttgt 272  Q
    |||| ||||||||||| |||| ||| ||||||||| || ||||| ||||||| |||||||| |||||    
T  33208480 aagttaaatattaaatttaatacatacatttcaataaattatttctatatttgattcattaacttgt 33208414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 9665597 - 9665560
Alignment:
Q  47 tgcaaaattagcaaaagatagggggaaagtgcaattaa 84  Q
    |||| ||||||||||||||||||| |||||||||||||    
T  9665597 tgcacaattagcaaaagataggggaaaagtgcaattaa 9665560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 298
Target Start/End: Complemental strand, 10020748 - 10020695
Alignment:
Q  245 tatttatatatttaattcattagcttgtgccttaaggacacaagttaacatttc 298  Q
    ||||| ||||||||||| |||| |||||| ||||||| ||||||| ||||||||    
T  10020748 tatttctatatttaatttattaacttgtgtcttaagggcacaagtcaacatttc 10020695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 268 - 300
Target Start/End: Original strand, 3557870 - 3557902
Alignment:
Q  268 cttgtgccttaaggacacaagttaacatttctc 300  Q
    |||||||||||||| ||||||||||||||||||    
T  3557870 cttgtgccttaagggcacaagttaacatttctc 3557902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 270 - 302
Target Start/End: Original strand, 13789904 - 13789936
Alignment:
Q  270 tgtgccttaaggacacaagttaacatttctctt 302  Q
    |||||| ||||||||||||||||||||||||||    
T  13789904 tgtgccctaaggacacaagttaacatttctctt 13789936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 87
Target Start/End: Complemental strand, 22428970 - 22428934
Alignment:
Q  52 aattagcaaaagataggggg-aaagtgcaattaagcc 87  Q
    |||||||||||||||||||| ||||||||||||||||    
T  22428970 aattagcaaaagataggggggaaagtgcaattaagcc 22428934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 301
Target Start/End: Complemental strand, 25983084 - 25983028
Alignment:
Q  245 tatttatatatttaattcattagcttgtgccttaaggacacaagttaacatttctct 301  Q
    ||||| ||||||||| |||||| ||| || ||| ||||||||||||| |||||||||    
T  25983084 tatttctatatttaaatcattaacttatgtcttgaggacacaagttagcatttctct 25983028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 91
Target Start/End: Original strand, 34577181 - 34577221
Alignment:
Q  52 aattagcaaaagatagggggaaa-gtgcaattaagccataa 91  Q
    ||||||||||||||||||| ||| |||||||||||||||||    
T  34577181 aattagcaaaagataggggaaaaagtgcaattaagccataa 34577221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 206 - 300
Target Start/End: Complemental strand, 38354346 - 38354252
Alignment:
Q  206 aagtgaaatattaaatataatgcatgcatttcaatcaactatttatatatttaattcattagcttgtgccttaaggacacaagttaacatttctc 300  Q
    |||| ||| ||||| | |||||||| ||||||||| || ||||| ||||||| |||||||| |||||  ||||||||||||||||||||||||||    
T  38354346 aagttaaacattaattgtaatgcatacatttcaataaattatttctatatttgattcattaacttgtatcttaaggacacaagttaacatttctc 38354252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 297
Target Start/End: Complemental strand, 9319953 - 9319862
Alignment:
Q  206 aagtgaaatattaaatataatgcatgcatttcaatcaactatttatatatttaattcattagcttgtgccttaaggacacaagttaacattt 297  Q
    |||| ||| |||||||||||||||  |||| |||| || ||||| ||||||| ||| ||||  ||||||||||||| |||| ||||||||||    
T  9319953 aagttaaagattaaatataatgcacacattgcaataaattatttttatatttgattaattaagttgtgccttaagggcacacgttaacattt 9319862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 302
Target Start/End: Original strand, 45088297 - 45088376
Alignment:
Q  223 taatgcatgcatttcaatcaactatttatatatttaattcattagcttgtgccttaaggacacaagttaacatttctctt 302  Q
    |||||||  |||| |||| | |||||| ||||||| ||| |||| || |||||||||| |||||||||||||||||||||    
T  45088297 taatgcacacattccaataacctatttttatatttgatttattaactcgtgccttaagaacacaagttaacatttctctt 45088376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 297
Target Start/End: Original strand, 50328440 - 50328531
Alignment:
Q  206 aagtgaaatattaaatataatgcatgcatttcaatcaactatttatatatttaattcattagcttgtgccttaaggacacaagttaacattt 297  Q
    |||| ||| ||||||| |||||||  |||| ||||   |||||| ||||| | |||||||| ||||| ||||||||||||||||||||||||    
T  50328440 aagttaaagattaaatgtaatgcacacattccaatatcctatttctatatctgattcattaacttgtaccttaaggacacaagttaacattt 50328531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 188
Target Start/End: Complemental strand, 37056314 - 37056237
Alignment:
Q  111 gcacatgttaaaaatcctaaaagaagaagtattctttaaaattttgtgatttcaattcatcaaaaagtgaaatattaa 188  Q
    ||||||| |||||| | ||||||||||| |||||| |||| |||||||  |||||||||| ||||||| ||| |||||    
T  37056314 gcacatgataaaaaacttaaaagaagaattattctctaaagttttgtgtattcaattcattaaaaagttaaagattaa 37056237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 245 - 298
Target Start/End: Complemental strand, 53133502 - 53133449
Alignment:
Q  245 tatttatatatttaattcattagcttgtgccttaaggacacaagttaacatttc 298  Q
    ||||| |||||||  ||||||| |||||||||||||| ||||||||||||||||    
T  53133502 tatttctatatttgtttcattaacttgtgccttaagggcacaagttaacatttc 53133449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 188
Target Start/End: Original strand, 55322945 - 55323022
Alignment:
Q  111 gcacatgttaaaaatcctaaaagaagaagtattctttaaaattttgtgatttcaattcatcaaaaagtgaaatattaa 188  Q
    ||||||||||| || ||  ||||||||| |||| ||||||||||||||  |||||||||| ||||||| ||| |||||    
T  55322945 gcacatgttaagaaaccccaaagaagaaatattttttaaaattttgtgcattcaattcattaaaaagttaaagattaa 55323022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 298
Target Start/End: Complemental strand, 46393180 - 46393124
Alignment:
Q  242 aactatttatatatttaattcattagcttgtgccttaaggacacaagttaacatttc 298  Q
    |||||||| ||  |||||| ||||| ||| |||||||||||||||||||||||||||    
T  46393180 aactatttctacttttaatacattaacttatgccttaaggacacaagttaacatttc 46393124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 297
Target Start/End: Complemental strand, 2549014 - 2548976
Alignment:
Q  259 attcattagcttgtgccttaaggacacaagttaacattt 297  Q
    |||||||| ||||| ||||||||||||||||||||||||    
T  2549014 attcattaacttgttccttaaggacacaagttaacattt 2548976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 298
Target Start/End: Original strand, 2554171 - 2554245
Alignment:
Q  224 aatgcatgcatttcaatcaactatttatatatttaattcattagcttgtgccttaaggacacaagttaacatttc 298  Q
    |||||||  ||| |||| || ||||| ||| ||| |||||||| |||||||||||||| ||||||||| ||||||    
T  2554171 aatgcattaattacaattaaatatttctatttttgattcattaacttgtgccttaagggcacaagttagcatttc 2554245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 187
Target Start/End: Complemental strand, 26740878 - 26740820
Alignment:
Q  129 aaaagaagaagtattctttaaaattttgtgatttcaattcatcaaaaagtgaaatatta 187  Q
    |||||||||| |||||| ||||||||||||  |||||||||| ||||||| ||| ||||    
T  26740878 aaaagaagaaatattctctaaaattttgtgcattcaattcattaaaaagttaaagatta 26740820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 301
Target Start/End: Original strand, 43732047 - 43732097
Alignment:
Q  251 tatatttaattcattagcttgtgccttaaggacacaagttaacatttctct 301  Q
    ||||||||| |||||| ||||||||||||||| |||||||||  |||||||    
T  43732047 tatatttaagtcattaacttgtgccttaaggagacaagttaatttttctct 43732097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 296
Target Start/End: Original strand, 55323009 - 55323099
Alignment:
Q  206 aagtgaaatattaaatataatgcatgcatttcaatcaactatttatatatttaattcattagcttgtgccttaaggacacaagttaacatt 296  Q
    |||| ||| ||||||| |||||||   ||| |||| || ||||| ||||||| ||||| || |||||||||||||| ||||||||| ||||    
T  55323009 aagttaaagattaaatgtaatgcacaaattccaataaattatttctatatttgattcactaacttgtgccttaagggcacaagttagcatt 55323099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 178
Target Start/End: Complemental strand, 8171191 - 8171114
Alignment:
Q  101 tgtccttaaagcacatgttaaaaatcctaaaagaagaagtattctttaaaattttgtgatttcaattcatcaaaaagt 178  Q
    |||||||||  || |||||||||| |  |||||||||| ||||| |||||||||||||  ||||||| || |||||||    
T  8171191 tgtccttaagacatatgttaaaaaactcaaaagaagaaatattcattaaaattttgtgcattcaatttattaaaaagt 8171114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 177
Target Start/End: Complemental strand, 46393291 - 46393214
Alignment:
Q  100 gtgtccttaaagcacatgttaaaaatcctaaaagaagaagtattctttaaaattttgtgatttcaattcatcaaaaag 177  Q
    ||||||||| |||||||||||| ||  | ||||||| || |||||| ||||||| ||||  |||||||||| ||||||    
T  46393291 gtgtccttagagcacatgttaagaaaaccaaaagaataaatattctctaaaattgtgtgcattcaattcattaaaaag 46393214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 87
Target Start/End: Original strand, 3930497 - 3930533
Alignment:
Q  52 aattagcaaaagataggggg-aaagtgcaattaagcc 87  Q
    |||||||||||||||||||| ||||||||||||||||    
T  3930497 aattagcaaaagatagggggaaaagtgcaattaagcc 3930533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 188
Target Start/End: Original strand, 41236021 - 41236097
Alignment:
Q  112 cacatgttaaaaatcctaaaagaagaagtattctttaaaattttgtgatttcaattcatcaaaaagtgaaatattaa 188  Q
    |||||||||||||  |||||||||||| |||| | ||||||||||||  || |||| || ||||||| ||| |||||    
T  41236021 cacatgttaaaaaatctaaaagaagaaatattttataaaattttgtgcatttaatttattaaaaagttaaagattaa 41236097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 295
Target Start/End: Complemental strand, 42674083 - 42674003
Alignment:
Q  215 attaaatataatgcatgcatttcaatcaactatttatatatttaattcattagcttgtgccttaaggacacaagttaacat 295  Q
    |||||||||||||||| |||| |||| || ||||| |||||||  ||||||| |||||  |||||||  |||| |||||||    
T  42674083 attaaatataatgcatacattccaatgaattatttttatatttgtttcattaacttgtatcttaagggtacaacttaacat 42674003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 158
Target Start/End: Original strand, 48622251 - 48622295
Alignment:
Q  114 catgttaaaaatcctaaaagaagaagtattctttaaaattttgtg 158  Q
    |||||||| || ||||||||||||| |||||| ||||||||||||    
T  48622251 catgttaagaaacctaaaagaagaaatattctctaaaattttgtg 48622295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 298
Target Start/End: Original strand, 49250107 - 49250199
Alignment:
Q  206 aagtgaaatattaaatataatgcatgcatttcaatcaactatttatatatttaattcattagcttgtgccttaaggacacaagttaacatttc 298  Q
    |||| ||| ||||||| |||| ||  ||||||||| |||||||| ||||||| ||  |||| | ||| ||||||||  |||||||||||||||    
T  49250107 aagttaaagattaaatgtaatacagacatttcaataaactatttttatatttgatgtattaacctgtaccttaagggtacaagttaacatttc 49250199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 188
Target Start/End: Complemental strand, 30732915 - 30732837
Alignment:
Q  110 agcacatgttaaaaatcctaaaagaagaagtattctttaaaattttgtgatttcaattcatcaaaaagtgaaatattaa 188  Q
    |||||||||||| || || |||||||||| |||| ||||||||||||| | |||||||||| ||||||| |||||||||    
T  30732915 agcacatgttaagaaacccaaaagaagaaatattttttaaaattttgtaaattcaattcattaaaaagttaaatattaa 30732837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 188
Target Start/End: Original strand, 28392157 - 28392219
Alignment:
Q  126 cctaaaagaagaagtattctttaaaattttgtgatttcaattcatcaaaaagtgaaatattaa 188  Q
    ||||||||||||| |||||||||||||||||||  |||||| ||| ||||||| ||| |||||    
T  28392157 cctaaaagaagaaatattctttaaaattttgtgcattcaatacattaaaaagttaaagattaa 28392219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 111 - 178
Target Start/End: Complemental strand, 28554290 - 28554223
Alignment:
Q  111 gcacatgttaaaaatcctaaaagaagaagtattctttaaaattttgtgatttcaattcatcaaaaagt 178  Q
    ||||||||||| | | |||||||||||| |||| ||||||||||||||  || |||| ||||||||||    
T  28554290 gcacatgttaagacttctaaaagaagaaatattttttaaaattttgtgcatttaattgatcaaaaagt 28554223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 170
Target Start/End: Complemental strand, 53287548 - 53287482
Alignment:
Q  104 ccttaaagcacatgttaa-aaatcctaaaagaagaagtattctttaaaattttgtgatttcaattcat 170  Q
    |||||| ||||||||||| |||||| |||||||||| |||||| ||||||||||||  ||||||||||    
T  53287548 ccttaaggcacatgttaagaaatcc-aaaagaagaaatattctctaaaattttgtgcattcaattcat 53287482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 302
Target Start/End: Complemental strand, 53683958 - 53683917
Alignment:
Q  261 tcattagcttgtgccttaaggacacaagttaacatttctctt 302  Q
    |||||| |||||||||||||| ||||||||||||||| ||||    
T  53683958 tcattaacttgtgccttaagggcacaagttaacatttttctt 53683917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 298
Target Start/End: Complemental strand, 54362051 - 54362014
Alignment:
Q  261 tcattagcttgtgccttaaggacacaagttaacatttc 298  Q
    |||||| |||||||||||||| ||||||||||||||||    
T  54362051 tcattaacttgtgccttaagggcacaagttaacatttc 54362014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 298
Target Start/End: Complemental strand, 28554218 - 28554134
Alignment:
Q  215 attaaatataatgcatgcatttcaatcaactatttatatatttaattcattagcttgtgcc-ttaaggacacaagttaacatttc 298  Q
    |||||||| ||| ||  ||||||||| || ||||| ||||||| | ||||||   |||||| |||||||||||||||||||||||    
T  28554218 attaaatacaatacacacatttcaataaattatttctatatttgaatcattaatctgtgcccttaaggacacaagttaacatttc 28554134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 176
Target Start/End: Original strand, 42791058 - 42791129
Alignment:
Q  104 ccttaaagcacatgttaaaaatcctaaaagaagaagtattctttaaaattttgtgatttcaattcatcaaaaa 176  Q
    ||||| |||||||||||| || || |||||||||| |||||| | ||||||||||  |||||||||| |||||    
T  42791058 ccttatagcacatgttaagaaaccaaaaagaagaaatattctct-aaattttgtgcattcaattcattaaaaa 42791129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 87
Target Start/End: Original strand, 47871139 - 47871175
Alignment:
Q  52 aattagcaaaagataggggg-aaagtgcaattaagcc 87  Q
    |||||||||||||||||||| ||||||||||||||||    
T  47871139 aattagcaaaagatagggggaaaagtgcaattaagcc 47871175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 298
Target Start/End: Complemental strand, 53287437 - 53287385
Alignment:
Q  246 atttatatatttaattcattagcttgtgccttaaggacacaagttaacatttc 298  Q
    |||| ||||||| | |||||| |||||| ||||||| ||||||||||||||||    
T  53287437 atttctatatttgaatcattaacttgtggcttaagggcacaagttaacatttc 53287385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 206 - 297
Target Start/End: Original strand, 30323108 - 30323199
Alignment:
Q  206 aagtgaaatattaaatataatgcatgcatttcaatcaactatttatatatttaattcattagcttgtgccttaaggacacaagttaacattt 297  Q
    |||| ||| ||||||| |||| ||| |||| |||| |||||||| ||||||| || ||||| | ||||||| ||||||||||||||||||||    
T  30323108 aagttaaagattaaatgtaatacatacattccaataaactatttctatatttgatgcattaacatgtgcctaaaggacacaagttaacattt 30323199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 188
Target Start/End: Complemental strand, 4844538 - 4844465
Alignment:
Q  115 atgttaaaaatcctaaaagaagaagtattctttaaaattttgtgatttcaattcatcaaaaagtgaaatattaa 188  Q
    ||||||| || ||||||||||||| |||| ||||||||||||||  ||||||| || ||||||| |||||||||    
T  4844538 atgttaagaaacctaaaagaagaaatattttttaaaattttgtgcattcaatttattaaaaagttaaatattaa 4844465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 100 - 167
Target Start/End: Complemental strand, 2359799 - 2359732
Alignment:
Q  100 gtgtccttaaagcacatgttaaaaatcctaaaagaagaagtattctttaaaattttgtgatttcaatt 167  Q
    |||| |||| |||||||||||||||  ||||||||| || ||||||||| ||||||||| ||| ||||    
T  2359799 gtgttcttagagcacatgttaaaaaatctaaaagaaaaaatattctttagaattttgtgcttttaatt 2359732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 298
Target Start/End: Complemental strand, 31038316 - 31038233
Alignment:
Q  215 attaaatataatgcatgcatttcaatcaactatttatatatttaattcattagcttgtgccttaaggacacaagttaacatttc 298  Q
    |||||||||||||||  | ||||||| ||| ||||  ||||||| ||||||| ||| | |||||| |||||||||||| |||||    
T  31038316 attaaatataatgcacacttttcaataaacaattttcatatttagttcattaacttctaccttaaagacacaagttaatatttc 31038233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 169
Target Start/End: Original strand, 11842261 - 11842326
Alignment:
Q  104 ccttaaagcacatgttaa-aaatcctaaaagaagaagtattctttaaaattttgtgatttcaattca 169  Q
    |||||| ||||||||||| |||||| |||||||||| |||||| ||||||||||||  |||||||||    
T  11842261 ccttaaggcacatgttaagaaatcc-aaaagaagaaatattctctaaaattttgtgcattcaattca 11842326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 30388098 - 30388061
Alignment:
Q  52 aattagcaaaagataggggg-aaagtgcaattaagcca 88  Q
    |||||||||||||||||||| |||||||||||||||||    
T  30388098 aattagcaaaagataggggggaaagtgcaattaagcca 30388061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 87
Target Start/End: Complemental strand, 10039712 - 10039676
Alignment:
Q  52 aattagcaaaagataggggg-aaagtgcaattaagcc 87  Q
    |||||||||||||||||||| ||||||||||||||||    
T  10039712 aattagcaaaagatagggggaaaagtgcaattaagcc 10039676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 211 - 297
Target Start/End: Complemental strand, 25971503 - 25971417
Alignment:
Q  211 aaatattaaatataatgcatgcatttcaatcaactatttatatatttaattcattagcttgtgccttaaggacacaagttaacattt 297  Q
    ||||||||||| ||||||||||||| |||| ||| |||| ||||||| ||  ||||  |||| |||||| |||||||||||||||||    
T  25971503 aaatattaaatgtaatgcatgcattccaataaacaatttttatatttgatgtattaatttgtaccttaaagacacaagttaacattt 25971417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 188
Target Start/End: Original strand, 36827812 - 36827889
Alignment:
Q  111 gcacatgttaaaaatcctaaaagaagaagtattctttaaaattttgtgatttcaattcatcaaaaagtgaaatattaa 188  Q
    ||||||||||| || ||||||||||||| |||||| ||||||||||||  |||||||||| || |||| ||| |||||    
T  36827812 gcacatgttaagaaacctaaaagaagaaatattctctaaaattttgtgcattcaattcattaataagttaaaaattaa 36827889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 188
Target Start/End: Complemental strand, 23358580 - 23358504
Alignment:
Q  112 cacatgttaaaaatcctaaaagaagaagtattctttaaaattttgtgatttcaattcatcaaaaagtgaaatattaa 188  Q
    ||||||||||||| | ||||||||||| |||| ||||||||| ||||  |||||||||| |||| || ||| |||||    
T  23358580 cacatgttaaaaaacttaaaagaagaaatattttttaaaattgtgtgcattcaattcatgaaaaggttaaagattaa 23358504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 298
Target Start/End: Original strand, 48046952 - 48047039
Alignment:
Q  211 aaatattaaatataatgcatgcatttcaatcaactatttatatatttaattcattagcttgtgccttaaggacacaagttaacatttc 298  Q
    ||||||||||| |||||||  |||| |||| |   |||| ||||||| ||| |||| |||||||||||||| ||||||||| ||||||    
T  48046952 aaatattaaatgtaatgcacacattccaataattaatttctatatttgatttattaacttgtgccttaagggcacaagttagcatttc 48047039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 170
Target Start/End: Complemental strand, 3622348 - 3622278
Alignment:
Q  100 gtgtccttaaagcacatgttaaaaatcctaaaagaagaagtattctttaaaattttgtgatttcaattcat 170  Q
    ||||||||| |||| ||||||| ||   ||||||||||| |||| ||||||||||||||  ||||||||||    
T  3622348 gtgtccttagagcatatgttaagaaatttaaaagaagaaatattttttaaaattttgtgcattcaattcat 3622278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 35079996 - 35079950
Alignment:
Q  52 aattagcaaaagataggggg-aaagtgcaattaagccataagtaaat 97  Q
    |||||||||||||||||||| ||||||||||||||||| || |||||    
T  35079996 aattagcaaaagatagggggaaaagtgcaattaagccaaaactaaat 35079950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 298
Target Start/End: Complemental strand, 38318981 - 38318951
Alignment:
Q  268 cttgtgccttaaggacacaagttaacatttc 298  Q
    |||||||||||||||||||||||||||||||    
T  38318981 cttgtgccttaaggacacaagttaacatttc 38318951  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 178
Target Start/End: Original strand, 42306267 - 42306341
Alignment:
Q  104 ccttaaagcacatgttaaaaatcctaaaagaagaagtattctttaaaattttgtgatttcaattcatcaaaaagt 178  Q
    ||||| |||||||||||| || |  |||||||||| || ||| ||||||||||||  |||||||||| |||||||    
T  42306267 ccttagagcacatgttaagaaactcaaaagaagaaatactctctaaaattttgtgcattcaattcattaaaaagt 42306341  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 23686457 - 23686420
Alignment:
Q  52 aattagcaaaagataggggg-aaagtgcaattaagcca 88  Q
    |||||||||||||||||||| |||||||||||||||||    
T  23686457 aattagcaaaagatagggggaaaagtgcaattaagcca 23686420  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 188
Target Start/End: Original strand, 40019762 - 40019839
Alignment:
Q  111 gcacatgttaaaaatcctaaaagaagaagtattctttaaaattttgtgatttcaattcatcaaaaagtgaaatattaa 188  Q
    ||||||||||| || |||||||||||||| ||||| |||| |||||||  || || | || ||||||| |||||||||    
T  40019762 gcacatgttaagaaacctaaaagaagaagcattctctaaacttttgtgtatttaaatgattaaaaagttaaatattaa 40019839  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 298
Target Start/End: Complemental strand, 23358508 - 23358424
Alignment:
Q  215 attaaatataatgcatgcatttcaatcaactatttatatatttaattcattagcttgtgcctta-aggacacaagttaacatttc 298  Q
    |||||||||||| || |||||| ||| || ||||| |||| || |||||||| ||||| ||||| | ||||||||||| ||||||    
T  23358508 attaaatataatacacgcatttaaataaaatatttttataattgattcattaacttgtaccttagaagacacaagttagcatttc 23358424  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 215 - 297
Target Start/End: Original strand, 31663473 - 31663555
Alignment:
Q  215 attaaatataatgcatgcatttcaatcaactatttatatatttaattcattagcttgtgccttaaggacacaagttaacattt 297  Q
    |||||||||||||||  |||| |||| ||||||||||||||||  || |||| ||||| | |||| |||||||||||||||||    
T  31663473 attaaatataatgcacacattccaataaactatttatatatttgtttaattaacttgtactttaatgacacaagttaacattt 31663555  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 188
Target Start/End: Original strand, 44966026 - 44966103
Alignment:
Q  111 gcacatgttaaaaatcctaaaagaagaagtattctttaaaattttgtgatttcaattcatcaaaaagtgaaatattaa 188  Q
    ||||||||||| || || |||||||||| |||||| ||||||||||||  |||||||||| ||||||| ||| |||||    
T  44966026 gcacatgttaagaaacccaaaagaagaaatattctctaaaattttgtgcattcaattcattaaaaagttaaagattaa 44966103  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 298
Target Start/End: Original strand, 44966090 - 44966182
Alignment:
Q  206 aagtgaaatattaaatataatgcatgcatttcaatcaactatttatatatttaattcattagcttgtgccttaaggacacaagttaacatttc 298  Q
    |||| ||| |||||||  ||||||  |||| |||| || || || ||||||| | |||||| |||||||||||||| ||||||||||||||||    
T  44966090 aagttaaagattaaatgcaatgcacacattccaataaattaattctatatttgaatcattaacttgtgccttaagggcacaagttaacatttc 44966182  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 89
Target Start/End: Complemental strand, 17345773 - 17345731
Alignment:
Q  47 tgcaaaattagcaaaagatagggggaaagtgcaattaagccat 89  Q
    |||| ||||||||||||||||||| ||||||||||||| ||||    
T  17345773 tgcataattagcaaaagataggggaaaagtgcaattaaaccat 17345731  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 295
Target Start/End: Original strand, 6461348 - 6461397
Alignment:
Q  246 atttatatatttaattcattagcttgtgccttaaggacacaagttaacat 295  Q
    |||| |||||||||| ||||| |||||| |||||||| ||||||||||||    
T  6461348 atttctatatttaatgcattaacttgtgtcttaaggatacaagttaacat 6461397  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 291
Target Start/End: Original strand, 11617361 - 11617418
Alignment:
Q  234 tttcaatcaactatttatatatttaattcattagcttgtgccttaaggacacaagtta 291  Q
    |||||||||| | ||| ||| |||||||| ||| |||||||||||||| |||||||||    
T  11617361 tttcaatcaaatgtttctatgtttaattccttaacttgtgccttaagggcacaagtta 11617418  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 40221349 - 40221312
Alignment:
Q  52 aattagcaaaagatagggggaaa-gtgcaattaagcca 88  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  40221349 aattagcaaaagatagggggaaaggtgcaattaagcca 40221312  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 298
Target Start/End: Complemental strand, 34242437 - 34242357
Alignment:
Q  218 aaatataatgcatgcatttcaatcaactatttatatatttaattcattagcttgtgccttaaggacacaagttaacatttc 298  Q
    |||| |||||||| |||| |||| || ||||||||||||| |||||||| ||| | | |||| ||||||| ||| ||||||    
T  34242437 aaatgtaatgcatacattccaataaattatttatatatttgattcattaacttatactttaatgacacaatttagcatttc 34242357  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 188
Target Start/End: Complemental strand, 40740821 - 40740744
Alignment:
Q  111 gcacatgttaaaaatcctaaaagaagaagtattctttaaaattttgtgatttcaattcatcaaaaagtgaaatattaa 188  Q
    |||||||||||||| |||||||||| || |||||| ||||||||||||  ||||| |||| ||||||| ||| |||||    
T  40740821 gcacatgttaaaaaacctaaaagaataaatattctctaaaattttgtgcattcaaatcattaaaaagttaaagattaa 40740744  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 36434781 - 36434723
Alignment:
Q  130 aaagaagaagtattctttaaaattttgtgatttcaattcatcaaaaagtgaaatattaa 188  Q
    ||||||||| |||||||||||||||||||  ||||||| || ||||||||||| |||||    
T  36434781 aaagaagaaatattctttaaaattttgtgcattcaatttataaaaaagtgaaagattaa 36434723  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 177
Target Start/End: Original strand, 3727138 - 3727210
Alignment:
Q  105 cttaaagcacatgttaaaaatcctaaaagaagaagtattctttaaaattttgtgatttcaattcatcaaaaag 177  Q
    |||| ||||||||||||||| ||||||||||  | |||| | ||||||||||||  |||||||||| ||||||    
T  3727138 cttagagcacatgttaaaaaacctaaaagaatgaatattttataaaattttgtgcattcaattcattaaaaag 3727210  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 188
Target Start/End: Complemental strand, 19174197 - 19174121
Alignment:
Q  112 cacatgttaaaaatcctaaaagaagaagtattctttaaaattttgtgatttcaattcatcaaaaagtgaaatattaa 188  Q
    ||||||||||||| |||||||||||||  ||||||||||||||| ||  || || | || ||||||| |||||||||    
T  19174197 cacatgttaaaaaacctaaaagaagaaacattctttaaaattttatgcatttaaatgattaaaaagttaaatattaa 19174121  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 247 - 298
Target Start/End: Original strand, 10361235 - 10361286
Alignment:
Q  247 tttatatatttaattcattagcttgtgccttaaggacacaagttaacatttc 298  Q
    ||||||||||| | |||||| |||||||||| ||| ||||||||||||||||    
T  10361235 tttatatatttgaatcattaacttgtgccttgagggcacaagttaacatttc 10361286  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 302
Target Start/End: Original strand, 33274366 - 33274400
Alignment:
Q  268 cttgtgccttaaggacacaagttaacatttctctt 302  Q
    |||||||| ||||||||||||||||||||||||||    
T  33274366 cttgtgccctaaggacacaagttaacatttctctt 33274400  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 302
Target Start/End: Complemental strand, 34702702 - 34702668
Alignment:
Q  268 cttgtgccttaaggacacaagttaacatttctctt 302  Q
    |||||||||||||| ||||||||||||||||||||    
T  34702702 cttgtgccttaagggcacaagttaacatttctctt 34702668  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 298
Target Start/End: Complemental strand, 38666377 - 38666347
Alignment:
Q  268 cttgtgccttaaggacacaagttaacatttc 298  Q
    |||||||||||||||||||||||||||||||    
T  38666377 cttgtgccttaaggacacaagttaacatttc 38666347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 188
Target Start/End: Original strand, 4993235 - 4993312
Alignment:
Q  111 gcacatgttaaaaatcctaaaagaagaagtattctttaaaattttgtgatttcaattcatcaaaaagtgaaatattaa 188  Q
    ||||||||||| ||   ||||||||||| |||||| ||||||||||||  || ||||||| ||||||| ||| |||||    
T  4993235 gcacatgttaagaaatataaaagaagaaatattctctaaaattttgtgcatttaattcattaaaaagttaaagattaa 4993312  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 85
Target Start/End: Original strand, 23123534 - 23123567
Alignment:
Q  52 aattagcaaaagatagggggaaagtgcaattaag 85  Q
    ||||||||||||||| ||||||||||||||||||    
T  23123534 aattagcaaaagataaggggaaagtgcaattaag 23123567  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 188
Target Start/End: Complemental strand, 30203484 - 30203408
Alignment:
Q  112 cacatgttaaaaatcctaaaagaagaagtattctttaaaattttgtgatttcaattcatcaaaaagtgaaatattaa 188  Q
    ||||||||||| | ||||||| | ||| |||||| ||||||||||||  ||||| |||| ||||||| ||| |||||    
T  30203484 cacatgttaaagaacctaaaaaatgaaatattctctaaaattttgtgcattcaactcattaaaaagttaaagattaa 30203408  T

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Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 286
Target Start/End: Complemental strand, 32062303 - 32062259
Alignment:
Q  242 aactatttatatatttaattcattagcttgtgccttaaggacaca 286  Q
    |||||||| ||||||| |||||||| |||||| ||||||||||||    
T  32062303 aactatttctatatttgattcattaacttgtgacttaaggacaca 32062259  T

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Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 177
Target Start/End: Complemental strand, 32062385 - 32062337
Alignment:
Q  129 aaaagaagaagtattctttaaaattttgtgatttcaattcatcaaaaag 177  Q
    |||||||||| |||| ||||||||||||||  |||||||||| ||||||    
T  32062385 aaaagaagaaatattttttaaaattttgtgcattcaattcattaaaaag 32062337  T

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Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 34313800 - 34313764
Alignment:
Q  52 aattagcaaaagatagggggaaagtgcaattaagcca 88  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  34313800 aattaacaaaagataggggaaaagtgcaattaagcca 34313764  T

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Target: scaffold0050 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 178
Target Start/End: Complemental strand, 37324 - 37258
Alignment:
Q  111 gcacatgttaaaaatcctaaaagaagaagtattctttaaaattttgtgatttcaattcatcaaaaagt 178  Q
    |||||||||||||| ||||||||||||| |||| ||||||||||||||  |||||||| | |||||||    
T  37324 gcacatgttaaaaaacctaaaagaagaaatatt-tttaaaattttgtgcattcaattctttaaaaagt 37258  T

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Target: scaffold0319 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 91
Target Start/End: Original strand, 6714 - 6754
Alignment:
Q  52 aattagcaaaagataggggg-aaagtgcaattaagccataa 91  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  6714 aattagcaaaagatagggggaaaagtgcaattaagccataa 6754  T

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Target: scaffold0047 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 298
Target Start/End: Complemental strand, 66208 - 66116
Alignment:
Q  206 aagtgaaatattaaatataatgcatgcatttcaatcaactatttatatatttaattcattagcttgtgccttaaggacacaagttaacatttc 298  Q
    |||| ||| ||||||| ||||||||| ||| |||| || ||||  || |||| |||||||| |||||| ||||| |||||| |||||||||||    
T  66208 aagttaaaaattaaatgtaatgcatgaattccaataaaatattcctacatttgattcattaacttgtgtcttaaagacacacgttaacatttc 66116  T

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Target: scaffold0047; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 188
Target Start/End: Complemental strand, 66255 - 66195
Alignment:
Q  128 taaaagaagaagtattctttaaaattttgtgatttcaattcatcaaaaagtgaaatattaa 188  Q
    ||||||||||| |||||| ||||||||||||  |||||||||  ||||||| ||| |||||    
T  66255 taaaagaagaaatattctctaaaattttgtgcattcaattcactaaaaagttaaaaattaa 66195  T

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Target: scaffold0015 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 88
Target Start/End: Original strand, 17168 - 17210
Alignment:
Q  47 tgcaaaattagcaaaagataggggg-aaagtgcaattaagcca 88  Q
    |||| |||||||||||||||||||| |||||||||||||||||    
T  17168 tgcacaattagcaaaagatagggggaaaagtgcaattaagcca 17210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 50598 - 50652
Alignment:
Q  104 ccttaaagcacatgttaaaaatcctaaaagaagaagtattctttaaaattttgtg 158  Q
    |||||| ||||||||||| || || |||||||||| |||||| ||||||||||||    
T  50598 ccttaaggcacatgttaagaaacccaaaagaagaaatattctctaaaattttgtg 50652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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