View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13195_low_1 (Length: 733)
Name: NF13195_low_1
Description: NF13195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13195_low_1 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 360 - 733
Target Start/End: Complemental strand, 7498968 - 7498595
Alignment:
| Q |
360 |
ttcataaagttataactttaactaataatgaaattatgatatggtcactgaccctggtcaaattcaccatgagaaatccaatgttgttactcttcaatcg |
459 |
Q |
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| T |
7498968 |
ttcataaagttataactttaactaataatgaaattatgatatggtcactgaccctggtcaaattcaccatgagaaatccaatgttgttactcttcaatcg |
7498869 |
T |
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| Q |
460 |
ttttagttgctttttggtgactgtcgaggtccaaccataacaattttcgaagtcatggtcactatcaaagatgttgtatgttttcagattcttggagttg |
559 |
Q |
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| T |
7498868 |
ttttagttgctttttggtgactgttgaggtccaaccataacaattttcgaagtcatggtcactatcaaagatgttgtatgttttcagattcttggagttg |
7498769 |
T |
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| Q |
560 |
tattcaatgcctgtaaagtatttaagaaatgaatcctccaattccaacacagtgctatgatctttttctgaaactgcatgcactataggcggtttctccg |
659 |
Q |
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| T |
7498768 |
tattcaatgcctgtaaagtatttaagaaatgaagcctccaattccaagacagtgctatgtttcttttctgaaactgcatgcactataggtggtgtctcag |
7498669 |
T |
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| Q |
660 |
tcttgtttgttatttcctcaatcaaatcctcaggcaccctcaaaagatattgaaactttagaacaaaatcaatt |
733 |
Q |
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| T |
7498668 |
tcttgtttgtgattgcctcaatcaaatcctccggcaccttcaaaagaaattgaaagtttagaacaaaataaatt |
7498595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 9 - 288
Target Start/End: Complemental strand, 7499319 - 7499040
Alignment:
| Q |
9 |
agcacagattctttaccagccaaaaactgaggatgatttttctttgcagcagtgctgaatcccataaaaacaagtgtctgattaacaaatgacatttgag |
108 |
Q |
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| T |
7499319 |
agcacagattctttaccagccaaaaactgaggatgatttttctttgcagcagtgctgaatcccataaaaacaagtggctgattaacaaatgacatttgag |
7499220 |
T |
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| Q |
109 |
ccattggatgaaacctaggcaccacaaaaacatctccttgctgaactctaaacctcttgtttttgcatttgtcatcattgttgcttccacataccactct |
208 |
Q |
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| T |
7499219 |
ccattggatgaaacctaggcaccacaaaaacatctccttgctgaactctaaacctcttgtttttgcatttgtcatcattgttgcttccacataccactct |
7499120 |
T |
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| Q |
209 |
taccattccttccccttccaacaccactgctacttctgttgccattggattccaatgtggccccaacattgatgcctttc |
288 |
Q |
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| T |
7499119 |
taccattccttccccttccaacaccactgctacttctgttgccattggattccaatgtggccccaacattgatgcctttc |
7499040 |
T |
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