View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13195_low_12 (Length: 303)
Name: NF13195_low_12
Description: NF13195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13195_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 25 - 286
Target Start/End: Complemental strand, 4749617 - 4749356
Alignment:
| Q |
25 |
cagtaacaaattttgaaaatgccacattaattaatagtattaaaaccttggctctttcgaagacatgtggatgattagtgaggttgataacggtccacaa |
124 |
Q |
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| T |
4749617 |
cagtaacaaattttgaaaatgccacattaattaatagtattaaaaccttggctctttcgaagacatgtggatgattagtgaggttgataacggtccacaa |
4749518 |
T |
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| Q |
125 |
aacaccataagcagagctttcatgaccagctaacaagaacaaaagaagcaagtctataatgtcttcatcttccaacttctcaccctcgtcgtctctggct |
224 |
Q |
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| T |
4749517 |
aacaccataagcagagctttcatgaccagctaacaagaacaaaagaagcaagtctataatgtcttcatcttccaacttctcaccctcgtcgtctctggct |
4749418 |
T |
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| Q |
225 |
tccatcaacaactccatcaaatcnnnnnnngtctgttgtttttcattattattgtttctcct |
286 |
Q |
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| T |
4749417 |
tccatcaacaactccatcaaatctttttttgtctgttgtttttcattattattgtttctcct |
4749356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 69 - 243
Target Start/End: Complemental strand, 4758054 - 4757880
Alignment:
| Q |
69 |
accttggctctttcgaagacatgtggatgattagtgaggttgataacggtccacaaaacaccataagcagagctttcatgaccagctaacaagaacaaaa |
168 |
Q |
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| T |
4758054 |
accttggccctttggaagacatgtggatgatcaatgaggtaaataatagtccacaaaattccatgagcagagctttcatgaccagctaacaagaacacaa |
4757955 |
T |
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| Q |
169 |
gaagcaagtctataatgtcttcatcttccaacttctcaccctcgtcgtctctggcttccatcaacaactccatca |
243 |
Q |
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| T |
4757954 |
gaagcaagtctataatgtcttcatcctccaacatcctaccctcttcatctttgacttccatcaataaatccatca |
4757880 |
T |
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