View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13195_low_13 (Length: 264)
Name: NF13195_low_13
Description: NF13195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13195_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 34760684 - 34760932
Alignment:
| Q |
1 |
tgcaaaataagtttgtgcttggtgcaaccaacattaatttgtttttgcacattagactgagtcatcttttaatatcaacct---ttgtacttctacattt |
97 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | || || |||||||| |
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| T |
34760684 |
tgcaaaataagtttgtgcttggtgcaaccaacatta-tttgtttttgcacattagactgagtcatcttttaatatcaaattagtttcaac--ctacattt |
34760780 |
T |
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| Q |
98 |
acttcctgtttctgccaggaaattaaggcaccagcttactaattatttttgactaccaacaggttagtataaaatggcatcagaattggcatggtgcact |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34760781 |
acttcctgtttctgccaggaaattaaggcaccagcttactaattatttttggctaccaacaggttagtataaaatggcatcagaattggcatggtgcact |
34760880 |
T |
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| Q |
198 |
taaaatatgctttttaccgtaactattataatactctcagttgttttcttag |
249 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
34760881 |
taaaatatgctttttaccgtaactattatattactctcagttgttttcttag |
34760932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 34766162 - 34765914
Alignment:
| Q |
1 |
tgcaaaataagtttgtgcttggtgcaaccaacattaatttgtttttgcacattagactgagtcatcttttaatatcaacct---ttgtacttctacattt |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | || || |||||||| |
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| T |
34766162 |
tgcaaaataagtttgtgcttggtgcaaccaacatta-tttgtttttgcacattagactgagtcatcttttaatatcaaattagtttcaac--ctacattt |
34766066 |
T |
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| Q |
98 |
acttcctgtttctgccaggaaattaaggcaccagcttactaattatttttgactaccaacaggttagtataaaatggcatcagaattggcatggtgcact |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34766065 |
acttcctgtttctgccaggaaattaaggcaccagcttactaattatttttggctaccaacaggttagtataaaatggcatcagaattggcatggtgcact |
34765966 |
T |
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| Q |
198 |
taaaatatgctttttaccgtaactattataatactctcagttgttttcttag |
249 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
34765965 |
taaaatatgctttttaccgtaactattatattactctcagttgttttcttag |
34765914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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