View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13195_low_14 (Length: 259)
Name: NF13195_low_14
Description: NF13195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13195_low_14 |
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| [»] scaffold0238 (1 HSPs) |
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Alignment Details
Target: scaffold0238 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: scaffold0238
Description:
Target: scaffold0238; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 217
Target Start/End: Complemental strand, 13196 - 12998
Alignment:
| Q |
19 |
aatataatagaggagataaatgaccattttaagatcatgcatctaagatagaggagaacaaatcaagaagatgatagaagcaaatgagaggcgtggagct |
118 |
Q |
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| T |
13196 |
aatataatagaggagataaatgaccattttaagatcatgcatctaagatagaggagaacaaatcaagaagatgatagaagcaaatgagaggcgtggagtt |
13097 |
T |
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| Q |
119 |
gaagaagatatgtgggaaaatgatttactaagaaaatgaagaaaatcaacttagcatggcacacattaatcttttcctctttggttgtcaaacagaggg |
217 |
Q |
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| T |
13096 |
gaagaagatatgtgggaaaatgatttactaagaaaatgaagaaaatcaacttagcatggcacacattaatcttttcctctttggttgtcaaacagaggg |
12998 |
T |
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Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 217
Target Start/End: Complemental strand, 10453360 - 10453162
Alignment:
| Q |
19 |
aatataatagaggagataaatgaccattttaagatcatgcatctaagatagaggagaacaaatcaagaagatgatagaagcaaatgagaggcgtggagct |
118 |
Q |
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| T |
10453360 |
aatataatagaggagataaatgaccattttaagatcatgcatctaagatagaggagaacaaatcaagaagatgacagaagcaaatgagaggcgtggagct |
10453261 |
T |
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| Q |
119 |
gaagaagatatgtgggaaaatgatttactaagaaaatgaagaaaatcaacttagcatggcacacattaatcttttcctctttggttgtcaaacagaggg |
217 |
Q |
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| T |
10453260 |
gaagaagatatgtgggaaaatgatttactaagaaaatgaagaaaatcaactgagcatggcacacattaatcttttcctctttggttgtcaaacagaggg |
10453162 |
T |
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Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 12603744 - 12603942
Alignment:
| Q |
19 |
aatataatagaggagataaatgaccattttaagatcatgcatctaagatagaggagaacaaatcaagaagatgatagaagcaaatgagaggcgtggagct |
118 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
12603744 |
aatataatagaggagataagtgaccattttaagatcatgcatctaagatagaggagaacaaatcaagaagatgatagaagcaaatgagaggcgtggagtt |
12603843 |
T |
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| Q |
119 |
gaagaagatatgtgggaaaatgatttactaagaaaatgaagaaaatcaacttagcatggcacacattaatcttttcctctttggttgtcaaacagaggg |
217 |
Q |
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| T |
12603844 |
gaagaagatatgtgggaaaatgatttactaagaaaatgaagaaaatcaacttagcatggcacacattaatcttttcctctttggttgtcaaacagaggg |
12603942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 23261892 - 23261698
Alignment:
| Q |
19 |
aatataatagaggagataaatgaccattttaagatcatgcatctaagatagaggagaacaaatcaagaagatgat----agaagcaaatgagaggcgtgg |
114 |
Q |
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|||| |||||||||||||||||||| |||||||||||||| ||||| |||||||||| ||| |||||||| ||| |||||||||||||| |||||| |
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| T |
23261892 |
aataaaatagaggagataaatgaccgttttaagatcatgcttctaaaatagaggagatcaa-tcaagaagttgacctgaagaagcaaatgagaagcgtgg |
23261794 |
T |
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| Q |
115 |
agctgaagaagatatgtgggaaaatgatttactaagaaaatgaagaaaatcaacttagcatggcacacattaatcttttcctctttggttgtcaaa |
210 |
Q |
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| T |
23261793 |
agctgaagaagatatgtgggaaaattatttacttataaaatgaacaaaatcaattgagcatggcacacgttaatcttttccacttcggttgtcaaa |
23261698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 56478055 - 56478249
Alignment:
| Q |
19 |
aatataatagaggagataaatgaccattttaagatcatgcatctaagatagaggagaacaaatcaagaagatgat----agaagcaaatgagaggcgtgg |
114 |
Q |
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| T |
56478055 |
aataaaatagaggagataaatgaccgtattaagatcatgcttctaaaatagaggagatcaa-tcaagaagttgacctgaagaagcaaatgagaagcgtgg |
56478153 |
T |
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| Q |
115 |
agctgaagaagatatgtgggaaaatgatttactaagaaaatgaagaaaatcaacttagcatggcacacattaatcttttcctctttggttgtcaaa |
210 |
Q |
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| T |
56478154 |
agctgaagaagatatgtgggaaaataatttacttaaaaaatgaacaaaatcaattgagcatggcacacgttaatcttttccacttcggttgtcaaa |
56478249 |
T |
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