View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13195_low_15 (Length: 235)

Name: NF13195_low_15
Description: NF13195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13195_low_15
NF13195_low_15
[»] chr7 (3 HSPs)
chr7 (28-222)||(17175183-17175376)
chr7 (84-119)||(18920538-18920573)
chr7 (91-119)||(31292569-31292597)
[»] chr6 (2 HSPs)
chr6 (146-222)||(17912573-17912649)
chr6 (78-119)||(17912666-17912707)
[»] chr3 (1 HSPs)
chr3 (148-222)||(39621469-39621543)
[»] chr4 (2 HSPs)
chr4 (148-219)||(9475876-9475947)
chr4 (91-119)||(9475975-9476003)
[»] chr5 (2 HSPs)
chr5 (146-222)||(28312832-28312908)
chr5 (84-119)||(17306440-17306475)
[»] chr1 (2 HSPs)
chr1 (148-222)||(44316853-44316927)
chr1 (82-119)||(10005437-10005474)


Alignment Details
Target: chr7 (Bit Score: 101; Significance: 3e-50; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 28 - 222
Target Start/End: Complemental strand, 17175376 - 17175183
Alignment:
Q  28 cgagcaagtggtataggatgggggctggtagagaagcctagttacccgttcagaggcggagcttagtatgggctgaggtgggccacggcccannnnnnnn 127  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||            
T  17175376 cgagcaagtggtataggatgggggctggtagggaagcctagttacccgttcagaggcggagcttagtatgggctgaggtgggccacggtcca-cccccca 17175278  T
Q  128 nnnnnnnngaannnnnnncctatagggaaaatacaaaaataccctcatcatattttattttttccaagtgacccacccagacttttccccttcct 222  Q
            |||       |||||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||    
T  17175277 aaaaaaaagaatttttttcctatagggaaaatacaaaaataccctcatcatattttatttttcccaagtggtccacccagacttttccccttcct 17175183  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 119
Target Start/End: Original strand, 18920538 - 18920573
Alignment:
Q  84 cggagcttagtatgggctgaggtgggccacggccca 119  Q
    |||||||| |||||||||||||||||||||||||||    
T  18920538 cggagcttggtatgggctgaggtgggccacggccca 18920573  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 119
Target Start/End: Original strand, 31292569 - 31292597
Alignment:
Q  91 tagtatgggctgaggtgggccacggccca 119  Q
    |||||||||||||||||||||||||||||    
T  31292569 tagtatgggctgaggtgggccacggccca 31292597  T

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Target: chr6 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 146 - 222
Target Start/End: Complemental strand, 17912649 - 17912573
Alignment:
Q  146 cctatagggaaaatacaaaaataccctcatcatattttattttttccaagtgacccacccagacttttccccttcct 222  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  17912649 cctatagggaaaatacaaaaataccctcatcatattttatttttcccaagtggcccacccagacttttccccttcct 17912573  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 119
Target Start/End: Complemental strand, 17912707 - 17912666
Alignment:
Q  78 cagaggcggagcttagtatgggctgaggtgggccacggccca 119  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  17912707 cagaggcggagcttagtatgggctgaggtggaccacggccca 17912666  T

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Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 148 - 222
Target Start/End: Original strand, 39621469 - 39621543
Alignment:
Q  148 tatagggaaaatacaaaaataccctcatcatattttattttttccaagtgacccacccagacttttccccttcct 222  Q
    |||||||||| ||||||||||  |||| ||||||||||||||| |||||| ||||| ||||||||||||||||||    
T  39621469 tatagggaaattacaaaaataggctcagcatattttatttttttcaagtggcccactcagacttttccccttcct 39621543  T

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Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 9475947 - 9475876
Alignment:
Q  148 tatagggaaaatacaaaaataccctcatcatattttattttttccaagtgacccacccagacttttcccctt 219  Q
    |||||||||| |||||||||||||||| | ||||||||||||| ||| || |||||||||||| ||||||||    
T  9475947 tatagggaaattacaaaaataccctcagcttattttatttttttcaattggcccacccagactattcccctt 9475876  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 119
Target Start/End: Complemental strand, 9476003 - 9475975
Alignment:
Q  91 tagtatgggctgaggtgggccacggccca 119  Q
    |||||||||||||||||||||||||||||    
T  9476003 tagtatgggctgaggtgggccacggccca 9475975  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 146 - 222
Target Start/End: Original strand, 28312832 - 28312908
Alignment:
Q  146 cctatagggaaaatacaaaaataccctcatcatattttattttttccaagtgacccacccagacttttccccttcct 222  Q
    |||||||| ||| ||||||||||  |||| ||||||||||||||  ||||||  |||| ||||||||||||||||||    
T  28312832 cctataggaaaattacaaaaataggctcagcatattttatttttctcaagtggtccactcagacttttccccttcct 28312908  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 119
Target Start/End: Complemental strand, 17306475 - 17306440
Alignment:
Q  84 cggagcttagtatgggctgaggtgggccacggccca 119  Q
    |||||||| |||||||||||||||||||||||||||    
T  17306475 cggagcttggtatgggctgaggtgggccacggccca 17306440  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 222
Target Start/End: Complemental strand, 44316927 - 44316853
Alignment:
Q  148 tatagggaaaatacaaaaataccctcatcatattttattttttccaagtgacccacccagacttttccccttcct 222  Q
    |||||||||||||| ||||||| |||| | ||||||||||||| | | ||  | | |||||||||||||||||||    
T  44316927 tatagggaaaatacgaaaatacactcaacttattttatttttttcgattggtctatccagacttttccccttcct 44316853  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 119
Target Start/End: Original strand, 10005437 - 10005474
Alignment:
Q  82 ggcggagcttagtatgggctgaggtgggccacggccca 119  Q
    |||||||  |||||||||||||||||||||||||||||    
T  10005437 ggcggaggatagtatgggctgaggtgggccacggccca 10005474  T

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