View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13195_low_3 (Length: 559)
Name: NF13195_low_3
Description: NF13195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13195_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 360; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 27 - 547
Target Start/End: Original strand, 2238346 - 2238869
Alignment:
| Q |
27 |
aaattaaataaaactaaaaactagctgaaccaaccgtgactcaaccaattcaactgcggttcaattagattacgatataatcaaaatcaaaccaaccgat |
126 |
Q |
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||||||||||||| |||||||||| ||||||||| |||| ||||||||||||| || ||||||||||||||||||||||||||| | |||||||||||| |
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| T |
2238346 |
aaattaaataaaaataaaaactagttgaaccaactgtgattcaaccaattcaattgtggttcaattagattacgatataatcaagaacaaaccaaccgac |
2238445 |
T |
|
| Q |
127 |
gaacc----gtttcttagttcaaccagttgaacctggtgatatgatccgattcttaaaacattggaaagaagatcaagaagcatgagaaaaagaatgtaa |
222 |
Q |
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|||| | |||||| ||||| || ||||||| |||||| ||| |||| ||||||||||||||||||||| |||| || |||| || ||||||||| |
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| T |
2238446 |
gaactagctgattcttatttcaatcaattgaaccaactgatataatctgatttttaaaacattggaaagaagattaagaggcttgagcaagagaatgtaa |
2238545 |
T |
|
| Q |
223 |
ttatactaacccattataataagttccagacatggtaacaactgctgcaggatgattatccaaatgagtcaaccaaacaagctcaccagttctcctttca |
322 |
Q |
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| T |
2238546 |
tt-tactaacccattgtaataagttccagacatggtaacaactcctgcagggtgattatccaaatgagtcaaccaaacaagctcaccagttctcctttca |
2238644 |
T |
|
| Q |
323 |
agaccaataacaacagcaggtccataaattccaacaatcaataaatcttcagccactgttggagttgctctagccactgtccaatttgcattaattataa |
422 |
Q |
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| T |
2238645 |
agaccaataacaacagcaggtccataaattccaacaatcaacaaatcttcagccacagttggagttgctctagccaatgtccaatttgcattaattataa |
2238744 |
T |
|
| Q |
423 |
atccagttgtattcaaacctgtcaatttctccaagttttgcttccaaacaagtgacccatcaatttgtttaattgcatatatgttaccattccaacttgg |
522 |
Q |
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| T |
2238745 |
atccagttgtatttaaacctgtcaatttctccaagttttgcttccaaacaagtgatccatcaacttgtttaattgcatatatgttaccattccagcttgg |
2238844 |
T |
|
| Q |
523 |
aaaataaattgtaccattgtatatt |
547 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
2238845 |
aaaataaattgtaccattgtatatt |
2238869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 214 - 547
Target Start/End: Original strand, 2229575 - 2229908
Alignment:
| Q |
214 |
agaatgtaattatactaacccattataataagttccagacatggtaacaactgctgcaggatgattatccaaatgagtcaaccaaacaagctcaccagtt |
313 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
2229575 |
agaatggaattatactaacccattataataagttccagacatggtaataactcctgcaggatgattatccaaatgggtcaaccaaataagctcaccagtt |
2229674 |
T |
|
| Q |
314 |
ctcctttcaagaccaataacaacagcaggtccataaattccaacaatcaataaatcttcagccactgttggagttgctctagccactgtccaatttgcat |
413 |
Q |
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| T |
2229675 |
ctcctttcaagaccaataacaacagcaggtccataaattccaacaatcaataaatcttcagccacagttggagttgctctagccactgaccaatttacag |
2229774 |
T |
|
| Q |
414 |
taattataaatccagttgtattcaaacctgtcaatttctccaagttttgcttccaaacaagtgacccatcaatttgtttaattgcatatatgttaccatt |
513 |
Q |
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| |||| |||||||| ||| ||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2229775 |
ctttgataattccagttgcatttaaacctgtcaattcctccaaattttgcttccaaacaagtgatccatcaatttgtttaattgcatatatgttaccatt |
2229874 |
T |
|
| Q |
514 |
ccaacttggaaaataaattgtaccattgtatatt |
547 |
Q |
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||| | |||||||||||||||||||||||||||| |
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| T |
2229875 |
ccagcatggaaaataaattgtaccattgtatatt |
2229908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 67 - 126
Target Start/End: Original strand, 2229447 - 2229506
Alignment:
| Q |
67 |
tcaaccaattcaactgcggttcaattagattacgatataatcaaaatcaaaccaaccgat |
126 |
Q |
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||||||||||||||| |||||||||| ||||||||| |||||| |||||||||| |||| |
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| T |
2229447 |
tcaaccaattcaactagggttcaattaaattacgatacaatcaagatcaaaccaatcgat |
2229506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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