View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13195_low_4 (Length: 541)
Name: NF13195_low_4
Description: NF13195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13195_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 1e-98; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 17 - 306
Target Start/End: Complemental strand, 23939076 - 23938786
Alignment:
| Q |
17 |
acaatgaactttgggattatgtagaagagcgattattttatcagcttaacaggatggtcaaactttgattatgttggagatacatatgatagaaagagta |
116 |
Q |
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| T |
23939076 |
acaatgaactttgggattatgtagaaaagcgattattttatcagcttaacatgatggtcaaactttgattatgctggagatatagatgacagaaagagta |
23938977 |
T |
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| Q |
117 |
tatcaagttttgtgcttatgataggcaatggagcaatatcatggtcacttaagaagcaatcgattgtgactttgtccactac-gaaagttgagtttgtgg |
215 |
Q |
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| T |
23938976 |
catcaagttatgtgtttattataggcaatggagcaatatcatggtcatttaagaagcagtcaattgtgactttgtccactgcagaagttttagtttgtgg |
23938877 |
T |
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| Q |
216 |
cagcagcttcttgctcctgttaagcaatttggctgtgaagaattttgaagtgtctgaaggaagataaagagaatttcacagttgcgtatta |
306 |
Q |
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| T |
23938876 |
cagcagattcttgctaatgttaagcaatttggttgtgaagaattttgatgtgtctgaaggaagctcaagagaatttcacaattgcgtatta |
23938786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 334 - 525
Target Start/End: Complemental strand, 23937846 - 23937652
Alignment:
| Q |
334 |
atgaagatgaaggttatggtggcaatagatgagagtgatggaagcttgtatgctcttaagtgggcccttgataatctcttcaacattatgactactaata |
433 |
Q |
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| T |
23937846 |
atgaagatgaaggtgatggtggcaatagatgagagtgatggaagcttgtatgctcttaagtgggcccttgataacctcttcaacattatggctactgata |
23937747 |
T |
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| Q |
434 |
ctatggaaggaacatcatctgaaa---acgagggaatggtgttccttgttcatgttgagccaaatttccacacttatgcttaccctatacctatg |
525 |
Q |
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| T |
23937746 |
ctatgaatggaacaacatctgaaaatgaggaggggatagtgtttcttgttcatgttgagccaaattttcacacttatgcataccctatacctatg |
23937652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 321 - 508
Target Start/End: Complemental strand, 23932136 - 23931955
Alignment:
| Q |
321 |
agaaaagagaaggatgaagatgaaggttatggtggcaatagatgagagtgatggaagcttgtatgctcttaagtgggcccttgataatctcttcaacatt |
420 |
Q |
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| T |
23932136 |
agaagagagaaggatgaagatgaaggttatggtggcaatagatgaaagtgatggaagcttttatgcccttaagtgggcccttgataatctcttcaacgtt |
23932037 |
T |
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| Q |
421 |
atgactactaatactatggaaggaacatcatctgaaaacgagggaatggtgttccttgttcatgttgagccaaatttccacacttatg |
508 |
Q |
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| T |
23932036 |
atgac------taccatggaaggaacatcatctgaaaatgagggaatggtgtttcttgttcatgttgaacccattttccacaattatg |
23931955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 134 - 249
Target Start/End: Original strand, 2083699 - 2083814
Alignment:
| Q |
134 |
atgataggcaatggagcaatatcatggtcacttaagaagcaatcgattgtgactttgtccactacgaaagttgagtttgtggcagcagcttcttgctcct |
233 |
Q |
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| T |
2083699 |
atgataggaaatggagcaatatcttggtcatctaagaagcaaccaattgttactttttctactactgaagttgagtatgttgtagcagttttgtgctctt |
2083798 |
T |
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| Q |
234 |
gttaagcaatttggct |
249 |
Q |
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| T |
2083799 |
gtcaaggaatttggct |
2083814 |
T |
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