View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13195_low_6 (Length: 424)
Name: NF13195_low_6
Description: NF13195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13195_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 143; Significance: 5e-75; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 1417276 - 1417434
Alignment:
| Q |
1 |
tagatcattgtaccatgtagtaaataccctgttgaattattattgaggaatgccagcattataaacaacattattcaaaaaatatcctatacatttattc |
100 |
Q |
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| T |
1417276 |
tagatcattgtaccatgtagtaaataccctgttgaattattattgaggagtgccagcaatataaacaacattattcaaaaaatatactatacatttattc |
1417375 |
T |
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| Q |
101 |
atttatatatcattgtaccatgtaaatacctgttaaataattaatgaggactgtcatcg |
159 |
Q |
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| T |
1417376 |
atttatatatcattataccatgtaaatacctgttaaataattaatgaggactgtcatcg |
1417434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 235 - 376
Target Start/End: Original strand, 1417510 - 1417651
Alignment:
| Q |
235 |
gcctacgaagttgctcatatttaaaaatttaacattttttacatggatttcaatcaaattatgcaggtctcgaataaatttgatgagactatgaatcatc |
334 |
Q |
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| T |
1417510 |
gcctacgaagttgctcatatttaaaaattgaacattttttacatggatttcaatcaaattatgcaggtctcgaataaatttgatgagactatgaatcatc |
1417609 |
T |
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| Q |
335 |
tcttttatatatctaatattttattcattcataggtgatata |
376 |
Q |
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| T |
1417610 |
tcttttatatatctaatattttattcattcataggtgatata |
1417651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 308 - 376
Target Start/End: Original strand, 1417734 - 1417804
Alignment:
| Q |
308 |
ataaatttgatgagactat--gaatcatctcttttatatatctaatattttattcattcataggtgatata |
376 |
Q |
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| T |
1417734 |
ataaatttaatgagactatatggatcatctcttttatgtaaccaatattttactcattcataggtgatata |
1417804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 353
Target Start/End: Complemental strand, 34039816 - 34039787
Alignment:
| Q |
324 |
tatgaatcatctcttttatatatctaatat |
353 |
Q |
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| T |
34039816 |
tatgaatcatctcttttatatatctaatat |
34039787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 373
Target Start/End: Original strand, 21489133 - 21489182
Alignment:
| Q |
324 |
tatgaatcatctcttttatatatctaatattttattcattcataggtgat |
373 |
Q |
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| T |
21489133 |
tatgagtcatctcttttatatgtctaatattttactcatttatagatgat |
21489182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 367
Target Start/End: Complemental strand, 4670488 - 4670452
Alignment:
| Q |
331 |
catctcttttatatatctaatattttattcattcata |
367 |
Q |
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| T |
4670488 |
catctattttatatatctaatatttttttcattcata |
4670452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 367
Target Start/End: Complemental strand, 2568540 - 2568508
Alignment:
| Q |
335 |
tcttttatatatctaatattttattcattcata |
367 |
Q |
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|||||||||||| |||||||||||||||||||| |
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| T |
2568540 |
tcttttatatatttaatattttattcattcata |
2568508 |
T |
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