View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13195_low_8 (Length: 326)
Name: NF13195_low_8
Description: NF13195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13195_low_8 |
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| [»] scaffold0446 (1 HSPs) |
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Alignment Details
Target: scaffold0446 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: scaffold0446
Description:
Target: scaffold0446; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 11 - 307
Target Start/End: Original strand, 889 - 1185
Alignment:
| Q |
11 |
cacagaggttggtttgacgaatcattgtttgacatccaattagtgggaatatagtggcgtgagatttcattaatcattaattatggactattcacgcaag |
110 |
Q |
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| T |
889 |
cacagaggttggtttgacgaatcattgtttgacatccaattagtgggaatatagtggcgtgagatttcattaatcattaattatggactattcaagcaag |
988 |
T |
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| Q |
111 |
ccccaccacttcacttcagtttaaccttaatcaaacataatttatttcccacccatcaacctttaaattgaaaaatgaaag-ttttttaaggtgttttac |
209 |
Q |
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| T |
989 |
ccccaccacttcacttca-ttttaccttaatcaaacataatttctttcccacccatcaacctttaaattgaaaaatgaaagtttttttaaggtgttttac |
1087 |
T |
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| Q |
210 |
atttttgacagataaatctaaaagtaaggtgtttgagtagagagtaaaacgcgataagaaaccatcttaatcaaatgcatatccaacatgaatcacat |
307 |
Q |
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| T |
1088 |
atttttgacagataaatctaaaagtaaggtgtttgagtagagagtagaacgcgataagaaaccatcttaatcaaatgcatatccaacatgaatcacat |
1185 |
T |
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Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 11 - 307
Target Start/End: Original strand, 56066332 - 56066628
Alignment:
| Q |
11 |
cacagaggttggtttgacgaatcattgtttgacatccaattagtgggaatatagtggcgtgagatttcattaatcattaattatggactattcacgcaag |
110 |
Q |
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| T |
56066332 |
cacagaggttggtttgacgaatcattgtttgacatccaattagtgggaatatagtggcgtgagatttcattaatcattaattatggactattcaagcaag |
56066431 |
T |
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| Q |
111 |
ccccaccacttcacttcagtttaaccttaatcaaacataatttatttcccacccatcaacctttaaattgaaaaatgaaag-ttttttaaggtgttttac |
209 |
Q |
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| T |
56066432 |
ccccaccacttcacttca-ttttaccttaatcaaacataatttctttcccacccatcaacctttaaattgaaaaatgaaagtttttttaaggtgttttac |
56066530 |
T |
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| Q |
210 |
atttttgacagataaatctaaaagtaaggtgtttgagtagagagtaaaacgcgataagaaaccatcttaatcaaatgcatatccaacatgaatcacat |
307 |
Q |
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| T |
56066531 |
atttttgacagataaatctaaaagtaaggtgtttgagtagagagtagaacgcgataagaaaccatcttaatcaaatgcatatccaacatgaatcacat |
56066628 |
T |
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