View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13196_high_2 (Length: 678)
Name: NF13196_high_2
Description: NF13196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13196_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 577; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 19 - 599
Target Start/End: Original strand, 53462692 - 53463272
Alignment:
| Q |
19 |
tcaccgaaaagggtctctcccctttagatcttgaaaagcttcctaaaatcaccggtaaggaattgctcgcgcccaccgaatgcgccgtttgccttgacga |
118 |
Q |
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| T |
53462692 |
tcaccgaaaagggtctctcccctttagatcttgaaaagcttcctaaaatcaccggtaaggaattgctcgcgcccaccgaatgcgccgtttgccttgacga |
53462791 |
T |
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| Q |
119 |
tatcgttgatgaacaaccggctcgtctgttacccggttgtaaccacgcttttcatctccaatgtgccgacacgtggctctccaaacaccctatgtgtcct |
218 |
Q |
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| T |
53462792 |
tatcgttgatgaacaaccggctcgtctgttacccggttgtaaccacgcttttcatctccaatgtgccgacacgtggctctccaaacaccctatgtgtcct |
53462891 |
T |
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| Q |
219 |
ctatgtagagcaaaacttgaccctcagagtctcaattctgagagtccctgctgaacgatcgatcaaaattcattggggcatgtttatatcagaataacat |
318 |
Q |
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| T |
53462892 |
ctatgtagagcaaaacttgaccctcagagtctcaattctgagagtccctgctgaacgatcgatcaaaattcattggtgcatgtttatatcagaataacat |
53462991 |
T |
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| Q |
319 |
gaattactctgatcatcgttgcgatattaaacatgcacttcatgacattgttatacagttgtgcacgaaaatcttgatattgagataaaattataagaaa |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53462992 |
gaattactctgatcatcgttgcgatattaaacatgcacttcatgacattgttatacagttgtgcacgaaaatcttgatattgagataaaattataagaaa |
53463091 |
T |
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| Q |
419 |
ttgccgtagttactgcggtaactttctgaaattgtcgcattttactgtgtatatgcaaatgaagcggcgtgcggcagaaggatagaagggttattacaaa |
518 |
Q |
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| T |
53463092 |
ttgccgtagttactgcggtaactttctgaaattgtcgcattttactgtgtatatgcaaatgaagcggcgtgcggcagaaggatagaagggttattacaaa |
53463191 |
T |
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| Q |
519 |
taacttatgttctaattttaggtttattttgttttattgtgaattattagtagctgctaatgtagtgatccaaaaatgttg |
599 |
Q |
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| T |
53463192 |
taacttatgttctaattttaggtttattttgttttattgtgaattattagtagctgctaatgtagtgatccaaaaatgttg |
53463272 |
T |
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