View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13196_low_1 (Length: 755)
Name: NF13196_low_1
Description: NF13196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13196_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 717; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 717; E-Value: 0
Query Start/End: Original strand, 11 - 739
Target Start/End: Original strand, 3922851 - 3923579
Alignment:
| Q |
11 |
caaaggtctgccgtataatgcacacttattaaatatagactcaaatggaaaagtaaatgtagactgagatgtccaagtaaacttcactgccaaatggatt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3922851 |
caaaggtctgccgtataatgcacacttattaaatatagactcaaatggaaaagtaaatgtagactgagatgtccaagtaaacttcactgccaaatggatt |
3922950 |
T |
|
| Q |
111 |
tcacccatcttagttacaccagagggatgtaaacctataagagggtaagaatgtgcatacactttgccgttttcaagtgttgatagacgaatccttatct |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3922951 |
tcacccatcttagttacaccagagggatgtaaacctataagagggtaagaatgtgcatacactttgccgttttcaagtgttgatagacgaatccttatct |
3923050 |
T |
|
| Q |
211 |
tagccattatagtatctcttgcacctctggctctactttcaggatctaactgattgttatcaaaaactccaatagtaatgactgtgaatggctcataaac |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3923051 |
tagccattatagtatctcttgcacctctggctctactttcaggatctaactgattgttatcaaaaactccaatagtaatgactgtgaatggctcataaac |
3923150 |
T |
|
| Q |
311 |
ttcccaaacatattgctcattccatcttggttcacggctgtcaacactggttcttgtccttacccattttggtccatatttcgccacacaatatgcatcg |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3923151 |
ttcccaaacatattgctcattccatcttggttcacggctgtcaacacttgttcttgtccttacccattttggtccatatttcgccacacaatatgcatcg |
3923250 |
T |
|
| Q |
411 |
gttctccccccaatcttcattggcatcaaattagttgcttttaagattccaagttccaaaacaccaatgcttggtggccaatgatctcttgatgaaggcc |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3923251 |
gttctccccccaatcttcattggcatcaaattagttgcttttaagattccaagttccaaaacaccaatgcttggtggccaatgatctcttgatgaaggcc |
3923350 |
T |
|
| Q |
511 |
taaagtcgctactatattcgagaggctcgtccgacacatgataaccaccattcaaagaaatcctcaaatgaatcttactagcaaacttcacctcccttgc |
610 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3923351 |
taaagtcactactatattcgagaggctcgtccgacacatgataaccaccattcaaagaaatcctcaaatgaatcttactagcaaacttcacctcccttgc |
3923450 |
T |
|
| Q |
611 |
attctcaataattccaggcctattaagatccacccatctatcatctgcaggtacatcatcaaatcttaaatccacatcgttcgaattattcaaattagtt |
710 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
3923451 |
attctcaataattccaggcctattaagatccacccatctatcatctgcaggtacatcatcaaatcttatatccacatcgttcgaattattcaaattagtt |
3923550 |
T |
|
| Q |
711 |
gtatatgtacccaaactcacattcacatg |
739 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
3923551 |
gtatatgtacccaaactcacattcacatg |
3923579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 303 - 414
Target Start/End: Original strand, 27253646 - 27253757
Alignment:
| Q |
303 |
tcataaacttcccaaacatattgctcattccatcttggttcacggctgtcaacactggttcttgtccttacccattttggtccatatttcgccacacaat |
402 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||| | | || |||||| | || ||||| || |||||||| | ||||| || || ||||||| |
|
|
| T |
27253646 |
tcataaacttcccaagtatattgctcattccaccttggtgaaagactatcaacaatagtccttgttctcacccatttagaaccatacttagctacacaat |
27253745 |
T |
|
| Q |
403 |
atgcatcggttc |
414 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
27253746 |
atgcgtcggttc |
27253757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University