View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13196_low_18 (Length: 234)
Name: NF13196_low_18
Description: NF13196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13196_low_18 |
 | |
|
| [»] scaffold1451 (1 HSPs) |
| | |
|
| [»] scaffold0526 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 10 - 216
Target Start/End: Original strand, 20750082 - 20750288
Alignment:
| Q |
10 |
tcgaagaatatctctttgaattctcagaatcttcttctgtacctttattgacaacttcnnnnnnnnnnnnnnnnnnnnttagcatcaacgactgttacat |
109 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
20750082 |
tcgaagaaaatctctttgaattctcagaatcttcttctgtacctttattgacagcttcaaaaaagaaagataaaaaaattagcatcaacgactgttacat |
20750181 |
T |
|
| Q |
110 |
gggttaaagcacaagaaagcatacaaagagcgaagccaaagtccttttgagcctaagagtctaaagtcaatttgaaggaaggaacctaacaattacacca |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
20750182 |
gggttaaagcacaagaaagcatacaaagagtgaagccaaagtccttttgagcctaagagtctaaagtcaatttgaaggaaggaaccaaacaattacacca |
20750281 |
T |
|
| Q |
210 |
acgaact |
216 |
Q |
| |
|
||||||| |
|
|
| T |
20750282 |
acgaact |
20750288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1451 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold1451
Description:
Target: scaffold1451; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 119 - 216
Target Start/End: Original strand, 1078 - 1175
Alignment:
| Q |
119 |
cacaagaaagcatacaaagagcgaagccaaagtccttttgagcctaagagtctaaagtcaatttgaaggaaggaacctaacaattacaccaacgaact |
216 |
Q |
| |
|
|||||||||||||| | || | |||||| |||| |||| ||||| |||||||||||| |||| ||||||||| |||| ||||||||||||||| |||| |
|
|
| T |
1078 |
cacaagaaagcatatagagcgtgaagccgaagttctttcgagccaaagagtctaaagccaatatgaaggaagaaacccaacaattacaccaacaaact |
1175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0526 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0526
Description:
Target: scaffold0526; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 208
Target Start/End: Complemental strand, 10034 - 9945
Alignment:
| Q |
119 |
cacaagaaagcatacaaagagcgaagccaaagtccttttgagcctaagagtctaaagtcaatttgaaggaaggaacctaacaattacacc |
208 |
Q |
| |
|
||||||||||||||| || || |||| || | |||||||| | || ||||||||| |||| |||||||||||||||||| |||||||| |
|
|
| T |
10034 |
cacaagaaagcataccgagcgcaaagctgaaattcttttgagacaaaaagtctaaagccaatatgaaggaaggaacctaaccattacacc |
9945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University