View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13196_low_7 (Length: 355)
Name: NF13196_low_7
Description: NF13196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13196_low_7 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 20749641 - 20749992
Alignment:
| Q |
1 |
aataaacacagttttgcagccatagtctcgctgttacgttctattctttcatattcctcctgttattcaaaactagaaaacaacaatgccaaaaatttgt |
100 |
Q |
| |
|
|||||||| ||||| ||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20749641 |
aataaacatagtttcgcagccatattctctctgttacgttctattctttcatattcctcctattattcaaaactagaaaacaacaatgccaaaaatttgt |
20749740 |
T |
|
| Q |
101 |
attcaaaccattactaatcctttttagagacctccccattaannnnnnnnnnnnaatctcaccgactcttccaaagaagcaatttccttccaccacgaga |
200 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20749741 |
attcaaaccattactaatcctttt-agaggcctccccattaattttttttt---aatctcaccgactcttccaaagaagcaatttccttccaccacgaga |
20749836 |
T |
|
| Q |
201 |
aggaaaaccaaggccaagattccccattatcttccaacaatcgacacacctgatcaccatatttaatccaaataacatctctctaaaggtagttttcccc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20749837 |
aggaaaaccaaggccaagattccccattatcttccaacaatcgacacacctgatcaccatatttaatccaaataacatctctctaaaggtagttttcccc |
20749936 |
T |
|
| Q |
301 |
ttgtatcaacctccaacaccatttagccaaaagact-taaatttaccaccctaaca |
355 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
20749937 |
ttgtatcaacctccaacaccatttagtcaaaagactacaaatttaccaccctaaca |
20749992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 170 - 259
Target Start/End: Complemental strand, 5450936 - 5450847
Alignment:
| Q |
170 |
tccaaagaagcaatttccttccaccacgagaaggaaaaccaaggccaagattccccattatcttccaacaatcgacacacctgatcacca |
259 |
Q |
| |
|
|||||||||| ||| |||||||||||||| ||||||||||||||||||||||| ||||| ||||||||| | ||||||| |||||||| |
|
|
| T |
5450936 |
tccaaagaagtaatgtccttccaccacgaagaggaaaaccaaggccaagattccacattactttccaacaaaccacacacccgatcacca |
5450847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 336
Target Start/End: Complemental strand, 49455883 - 49455854
Alignment:
| Q |
307 |
caacctccaacaccatttagccaaaagact |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
49455883 |
caacctccaacaccatttagccaaaagact |
49455854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 25428394 - 25428480
Alignment:
| Q |
1 |
aataaacacagttttgcagccatagtctcgctgttacgttctattctttcatattcctcctgttattcaaaactagaaaacaacaat |
87 |
Q |
| |
|
|||||| | ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25428394 |
aataaaaatagttttgcagccatattctctctgttacgttctattctttcatattcctcctgttattcaaaactagaaaacaacaat |
25428480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 25432594 - 25432678
Alignment:
| Q |
1 |
aataaacacagttttgcagccatagtctcgctgttacgttctattctttcatattcctcctgttattcaaaactagaaaacaaca |
85 |
Q |
| |
|
|||||| | ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25432594 |
aataaaaatagttttgcagccatattctctctgttacgttctattctttcatattcctcctgttattcaaaactagaaaacaaca |
25432678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 20334392 - 20334306
Alignment:
| Q |
1 |
aataaacacagttttgcagccatagtctcgctgttacgttctattctttcatattcctcctgttattcaaaactagaaaacaacaat |
87 |
Q |
| |
|
|||||| | |||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
20334392 |
aataaaaatagttttgcagccctattctctctgttacgttctattctttcatattcctcctgttattcaaaactagaaaactacaat |
20334306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 20330191 - 20330111
Alignment:
| Q |
1 |
aataaacacagttttgcagccatagtctcgctgttacgttctattctttcatattcctcctgttattcaaaactagaaaac |
81 |
Q |
| |
|
|||||| | |||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20330191 |
aataaaaatagttttgcagccctattctctctgttacgttctattctttcatattcctcctgttattcaaaactagaaaac |
20330111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 35943252 - 35943332
Alignment:
| Q |
1 |
aataaacacagttttgcagccatagtctcgctgttacgttctattctttcatattcctcctgttattcaaaactagaaaac |
81 |
Q |
| |
|
|||||| | |||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35943252 |
aataaaaatagttttgcagccctattctctctgttacgttctattctttcatattcctcctgttattcaaaactagaaaac |
35943332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 49210953 - 49211039
Alignment:
| Q |
1 |
aataaacacagttttgcagccatagtctcgctgttacgttctattctttcatattcctcctgttattcaaaactagaaaacaacaat |
87 |
Q |
| |
|
|||||| | ||||||||||||||| |||| || ||||||||||||||||||||||||| || ||||||||||||||||||| ||||| |
|
|
| T |
49210953 |
aataaaaatagttttgcagccatattctctctcttacgttctattctttcatattccttctattattcaaaactagaaaactacaat |
49211039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 49214435 - 49214520
Alignment:
| Q |
1 |
aataaacacagttttgcagccatagtctcgctgttacgttctattctttcatattcctcctgttattcaaaactagaaaacaacaa |
86 |
Q |
| |
|
|||||| | ||||||||||| ||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
49214435 |
aataaaaatagttttgcagcaatattctatctgttacgttctattctttcatattccttctgttattcaaaactagaaaactacaa |
49214520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 355
Target Start/End: Original strand, 10678545 - 10678605
Alignment:
| Q |
295 |
ttccccttgtatcaacctccaacaccatttagccaaaagacttaaatttaccaccctaaca |
355 |
Q |
| |
|
||||||||| ||||| |||||| ||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
10678545 |
ttccccttggatcaatctccaaagtcatttagccaatagacttaaatttaccactctaaca |
10678605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University