View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13197_high_1 (Length: 644)
Name: NF13197_high_1
Description: NF13197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13197_high_1 |
 | |
|
| [»] scaffold0020 (1 HSPs) |
| | |
|
| [»] scaffold0018 (1 HSPs) |
| | |
|
| [»] scaffold0022 (1 HSPs) |
| | |
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Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 17 - 432
Target Start/End: Complemental strand, 2682783 - 2682368
Alignment:
| Q |
17 |
ttaagcaaaattgaatcacatcgaaataagagggattctgaaaccgtgcatgtatgtgattgcatgattgaaggaagagagtgtcgactatgccttaaat |
116 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2682783 |
ttaagcaaaattgaatcacatcgaaatgagagggatcctgaaaccgtgcatgtatgtgattgcatgattgaaggaagagagtgtcgactatgccttaaat |
2682684 |
T |
|
| Q |
117 |
atgttgaaggaaagttggttaacataccaattatcattactttaaatgttaaaagacgtgtgttatatcacacaaaattatcataatataa-attttaag |
215 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2682683 |
atgttgaaggaaagttggttaacagaccaattatcattactttgaatgttaaaagacgtgtgttatatcacacaaaattatcataatataactttttaag |
2682584 |
T |
|
| Q |
216 |
tatagataaaaattttattcttgagttgtgtaacacaaaaatgaaaataaacgaagtaaactaaagatgctatgacaaaagaaaattatagttcgcatta |
315 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2682583 |
tatagataaaattcttattcttgagttgtgtaacacaaaaatgaaaataaacgaagtaaactaaagatgctatgacaaaagaaaattatagtacgcatta |
2682484 |
T |
|
| Q |
316 |
ttatcttaacaacaaggttcaaatagaaactagaaatagtgttacataatacatttccctctctaacatctagtctagattatgaacttttagataggag |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
2682483 |
ttatcttaacaacaaggttcaaatagaaactagaaatagtgttacataataca-ttccctctctaacatctagtctagattatgaacttctagataggag |
2682385 |
T |
|
| Q |
416 |
ggaaacatagcttattt |
432 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
2682384 |
ggaaacatagcttattt |
2682368 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 483 - 631
Target Start/End: Complemental strand, 2682317 - 2682169
Alignment:
| Q |
483 |
ttacaacatttaataactaataatctcaacgacgagttgttgtgatatggtccttatcttcctcgtcatgtgccattccgaaagtgttcttaactgcttc |
582 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
2682317 |
ttacaacatttaataactaataatctcaacgacgagttgttgtgatatggtccttatcttcctcgtcatgtgccattccaaaagtgttcttaactgcttc |
2682218 |
T |
|
| Q |
583 |
agtagcactttgggccatacccttaaccttttctcctgtctgttgtaag |
631 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2682217 |
agtagcactttgggccatacccttaaccttttctcctgtctgctgtaag |
2682169 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 519 - 627
Target Start/End: Complemental strand, 2667235 - 2667127
Alignment:
| Q |
519 |
ttgttgtgatatggtccttatcttcctcgtcatgtgccattccgaaagtgttcttaactgcttcagtagcactttgggccatacccttaaccttttctcc |
618 |
Q |
| |
|
||||||||| ||||||||| |||||||| |||| |||||| ||||||||||||||||||||||| |||| ||| ||||||||||||||||| || || |
|
|
| T |
2667235 |
ttgttgtgaaatggtccttgtcttcctcatcattattcattcctaaagtgttcttaactgcttcagttgcaccttgtgccatacccttaaccttctcacc |
2667136 |
T |
|
| Q |
619 |
tgtctgttg |
627 |
Q |
| |
|
||||||||| |
|
|
| T |
2667135 |
tgtctgttg |
2667127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 519 - 627
Target Start/End: Complemental strand, 2676253 - 2676145
Alignment:
| Q |
519 |
ttgttgtgatatggtccttatcttcctcgtcatgtgccattccgaaagtgttcttaactgcttcagtagcactttgggccatacccttaaccttttctcc |
618 |
Q |
| |
|
||||||||| ||||||||| |||||||| |||| |||||| ||||||||||||||||||||||| |||| ||| ||||||||||||||||| || || |
|
|
| T |
2676253 |
ttgttgtgaaatggtccttgtcttcctcatcattattcattcctaaagtgttcttaactgcttcagttgcaccttgtgccatacccttaaccttctcacc |
2676154 |
T |
|
| Q |
619 |
tgtctgttg |
627 |
Q |
| |
|
||||||||| |
|
|
| T |
2676153 |
tgtctgttg |
2676145 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 31817993 - 31817929
Alignment:
| Q |
29 |
gaatcacatcgaaataagagggattctgaaaccgtgcatgtatgtgattgcatgattgaaggaag |
93 |
Q |
| |
|
||||||||||| ||||||||||||| ||| | |||||||||| || |||||| |||||||||| |
|
|
| T |
31817993 |
gaatcacatcggaataagagggattatgaggtcatgcatgtatgggactgcatggttgaaggaag |
31817929 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 50399134 - 50399070
Alignment:
| Q |
29 |
gaatcacatcgaaataagagggattctgaaaccgtgcatgtatgtgattgcatgattgaaggaag |
93 |
Q |
| |
|
||||||||||| ||| |||||||| |||| |||||| | ||||| |||| |||| |||||||||| |
|
|
| T |
50399134 |
gaatcacatcggaatgagagggatcctgagaccgtgtaggtatgagattacatggttgaaggaag |
50399070 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 42515083 - 42515156
Alignment:
| Q |
21 |
gcaaaattgaatcacatcgaaataagagggattctgaaaccgtgcatgtatgtgattgcatgattgaaggaaga |
94 |
Q |
| |
|
||||||||||||||||||| ||| |||||||| |||| ||||||| ||||| || |||||||||||||||||| |
|
|
| T |
42515083 |
gcaaaattgaatcacatcggaatgagagggatcctgaggccgtgcaggtatgagactgcatgattgaaggaaga |
42515156 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 8067268 - 8067340
Alignment:
| Q |
18 |
taagcaaaattgaatcacatcgaaataagagggattctgaaaccgtgcatgtatgtgattgcatgattgaagg |
90 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||| |||| ||||||| ||||| ||||||||| ||||||| |
|
|
| T |
8067268 |
taagcaaaattgaatcacatcggaatgagagggaccctgaggccgtgcaggtatgggattgcatggttgaagg |
8067340 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 94
Target Start/End: Complemental strand, 4658140 - 4658074
Alignment:
| Q |
28 |
tgaatcacatcgaaataagagggattctgaaaccgtgcatgtatgtgattgcatgattgaaggaaga |
94 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| ||||| || | |||| ||||| ||||| |
|
|
| T |
4658140 |
tgaatcacatcgaaataagagggatcttgaaaccgtgcaggtatgagacttcatggttgaacgaaga |
4658074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 189059 - 189131
Alignment:
| Q |
21 |
gcaaaattgaatcacatcgaaataagagggattctgaaaccgtgcatgtatgtgattgcatgattgaaggaag |
93 |
Q |
| |
|
|||||| |||||||||||| ||| |||||||| |||| |||| |||||||| || |||||| |||||||||| |
|
|
| T |
189059 |
gcaaaactgaatcacatcggaatgagagggatcctgaggccgtacatgtatgggactgcatggttgaaggaag |
189131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 22975165 - 22975097
Alignment:
| Q |
21 |
gcaaaattgaatcacatcgaaataagagggattctgaaaccgtgcatgtatgtgattgcatgattgaag |
89 |
Q |
| |
|
|||||| |||||||||||| ||| |||||||| |||| ||||||| |||||||| |||||| |||||| |
|
|
| T |
22975165 |
gcaaaactgaatcacatcggaatgagagggatcctgaggccgtgcaggtatgtgactgcatggttgaag |
22975097 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 22556527 - 22556599
Alignment:
| Q |
21 |
gcaaaattgaatcacatcgaaataagagggattctgaaaccgtgcatgtatgtgattgcatgattgaaggaag |
93 |
Q |
| |
|
|||||| |||||||||||| ||| |||||| | |||| ||||||| ||||| || |||||| |||||||||| |
|
|
| T |
22556527 |
gcaaaactgaatcacatcggaatgagagggttcctgaggccgtgcaggtatgggactgcatggttgaaggaag |
22556599 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 23 - 92
Target Start/End: Complemental strand, 35759761 - 35759692
Alignment:
| Q |
23 |
aaaattgaatcacatcgaaataagagggattctgaaaccgtgcatgtatgtgattgcatgattgaaggaa |
92 |
Q |
| |
|
||||||||||||||||| ||| |||||||| |||| ||||||| ||||| || |||||| ||||||||| |
|
|
| T |
35759761 |
aaaattgaatcacatcggaatgagagggatcctgaggccgtgcaggtatgggactgcatggttgaaggaa |
35759692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 23 - 92
Target Start/End: Complemental strand, 35761067 - 35760998
Alignment:
| Q |
23 |
aaaattgaatcacatcgaaataagagggattctgaaaccgtgcatgtatgtgattgcatgattgaaggaa |
92 |
Q |
| |
|
||||||||||||||||| ||| |||||||| |||| ||||||| ||||| || |||||| ||||||||| |
|
|
| T |
35761067 |
aaaattgaatcacatcggaatgagagggatcctgaggccgtgcaggtatgagactgcatggttgaaggaa |
35760998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 23 - 93
Target Start/End: Complemental strand, 107616 - 107546
Alignment:
| Q |
23 |
aaaattgaatcacatcgaaataagagggattctgaaaccgtgcatgtatgtgattgcatgattgaaggaag |
93 |
Q |
| |
|
|||| |||||||||||| ||| ||||||||||||| |||| || ||||| || |||||| |||||||||| |
|
|
| T |
107616 |
aaaactgaatcacatcggaatgagagggattctgaggccgtacaggtatgggactgcatggttgaaggaag |
107546 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 23 - 93
Target Start/End: Original strand, 10293 - 10363
Alignment:
| Q |
23 |
aaaattgaatcacatcgaaataagagggattctgaaaccgtgcatgtatgtgattgcatgattgaaggaag |
93 |
Q |
| |
|
|||| |||||||||||| ||| |||||||| |||| ||||||||||||| || |||||| || ||||||| |
|
|
| T |
10293 |
aaaactgaatcacatcggaatgagagggatcctgaggccgtgcatgtatgggactgcatggttcaaggaag |
10363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 23 - 93
Target Start/End: Original strand, 24818319 - 24818389
Alignment:
| Q |
23 |
aaaattgaatcacatcgaaataagagggattctgaaaccgtgcatgtatgtgattgcatgattgaaggaag |
93 |
Q |
| |
|
|||| |||||||||||| ||| |||||||| |||| ||||||||||||| || |||||| || ||||||| |
|
|
| T |
24818319 |
aaaactgaatcacatcggaatgagagggatcctgaggccgtgcatgtatgggactgcatggttcaaggaag |
24818389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 94
Target Start/End: Original strand, 1953154 - 1953219
Alignment:
| Q |
29 |
gaatcacatcgaaataagagggattctgaaaccgtgcatgtatgtgattgcatgattgaaggaaga |
94 |
Q |
| |
|
||||||||||| ||| |||||||| ||||| |||||| ||||| || |||||| ||||||||||| |
|
|
| T |
1953154 |
gaatcacatcggaatgagagggatcctgaagtcgtgcaggtatgagactgcatggttgaaggaaga |
1953219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 93
Target Start/End: Complemental strand, 29259768 - 29259703
Alignment:
| Q |
28 |
tgaatcacatcgaaataagagggattctgaaaccgtgcatgtatgtgattgcatgattgaaggaag |
93 |
Q |
| |
|
|||||||||||| ||| |||||||| |||| ||||| || ||||| || |||||| |||||||||| |
|
|
| T |
29259768 |
tgaatcacatcggaatgagagggatcctgagaccgtacaagtatgggactgcatggttgaaggaag |
29259703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 162833 - 162760
Alignment:
| Q |
21 |
gcaaaattgaatcacatcgaaataagagggattctgaaaccgtgcatgtatgtgattgcatgattgaaggaaga |
94 |
Q |
| |
|
|||||| ||||| |||||| ||| |||||||| |||| |||| || |||||||| |||||| ||||||||||| |
|
|
| T |
162833 |
gcaaaactgaattacatcggaatgagagggatcctgaggccgtacaggtatgtgactgcatggttgaaggaaga |
162760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 17731268 - 17731195
Alignment:
| Q |
21 |
gcaaaattgaatcacatcgaaataagagggattctgaaaccgtgcatgtatgtgattgcatgattgaaggaaga |
94 |
Q |
| |
|
||||||||||||||||||| ||| |||||||| |||| |||| || ||||| || |||||| || |||||||| |
|
|
| T |
17731268 |
gcaaaattgaatcacatcggaatgagagggatcctgaggccgttcaggtatgggactgcatggttaaaggaaga |
17731195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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